Expression of 1-1-3.1.16.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00224 | 0.961 |
27DAP/17DAP | 1.09526 | 0.859 |
39DAP/27DAP | 0.96414 | 0.719 |
41DAP/39DAP | 1.28432 | 0.284 |
42DAP/41DAP | 1.10892 | 0.941 |
43DAP/42DAP | 0.89923 | 0.813 |
47DAP/43DAP | 1.29302 | 0.223 |
52DAP/47DAP | 0.92212 | 0.758 |
57DAP/52DAP | 0.86703 | 0.67 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90541 | 0.109 |
17DAP/reference | 1.04742 | 0.355 |
27DAP/reference | 0.99067 | 0.725 |
39DAP/reference | 1.05838 | 0.262 |
41DAP/reference | 1.12028 | 0.122 |
42DAP/reference | 1.01453 | 0.842 |
43DAP/reference | 1.19144 | 0.014 |
47DAP/reference | 1.30281 | 0.001 |
52DAP/reference | 1.07303 | 0.576 |
57DAP/reference | 1.00762 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95816 | 0.496 |
27DAP/17DAP | 1.01279 | 0.988 |
39DAP/27DAP | 1.06465 | 0.519 |
41DAP/39DAP | 1.1059 | 0.883 |
42DAP/41DAP | 0.95802 | 0.666 |
43DAP/42DAP | 1.08931 | 0.192 |
47DAP/43DAP | 1.01038 | 0.951 |
52DAP/47DAP | 1.02051 | 0.933 |
57DAP/52DAP | 1.0064 | 1 |
57DAP/7DAP | 1.23126 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93003 | 0.122 |
17DAP/reference | 0.91831 | 0.031 |
27DAP/reference | 0.8932 | 0.019 |
39DAP/reference | 1.01257 | 0.601 |
41DAP/reference | 0.95639 | 0.194 |
42DAP/reference | 0.92111 | 0.1 |
43DAP/reference | 0.96512 | 0.266 |
47DAP/reference | 0.96071 | 0.504 |
52DAP/reference | 0.95629 | 0.254 |
57DAP/reference | 1.0128 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97424 | 0.688 |
17DAP/reference | 0.96738 | 0.447 |
27DAP/reference | 0.85851 | 0.056 |
39DAP/reference | 0.85077 | 0.091 |
41DAP/reference | 0.8248 | 0.048 |
42DAP/reference | 0.82785 | 0.073 |
43DAP/reference | 1.03211 | 0.899 |
47DAP/reference | 0.95074 | 0.05 |
52DAP/reference | 0.96399 | 0.327 |
57DAP/reference | 1.03526 | 0.848 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90951 | 0.087 |
17DAP/reference | 0.97172 | 0.636 |
27DAP/reference | 0.85077 | 0.021 |
39DAP/reference | 0.86934 | 0.021 |
41DAP/reference | 0.92432 | 0.167 |
42DAP/reference | 0.85988 | 0.025 |
43DAP/reference | 0.89397 | 0.158 |
47DAP/reference | 1.47246 | 0.009 |
52DAP/reference | 1.33831 | 0.509 |
57DAP/reference | 1.13478 | 0.401 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.81081 | 1 |
26DAP/20DAP | 0.95028 | 0.512 |
34DAP/26DAP | 1.07224 | 1 |
51DAP/34DAP | 0.86724 | 0.298 |
52DAP/51DAP | 1.01836 | 0.86 |
53DAP/52DAP | 1.09231 | 0.623 |
55DAP/53DAP | 0.98134 | 0.852 |
57DAP/55DAP | 0.9345 | 0.698 |
62DAP/57DAP | 1.07229 | 1 |
68DAP/62DAP | 0.76114 | 0.152 |
68DAP/14DAP | 0.88782 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.90597 | 0.224 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.43699 | 0.086 |
Mature Green Tomato/Ripe Tomato | 0.89796 | 0.377 |
Immature Eggplant/Mature Eggplant | 1.18705 | 0.096 |
Ripe Pepper/Ripe Tomato | 0.51546 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.04887 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.1116 | 0.486 |
1-1-2/M82 | 0.97583 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.06052 | 0.611 |
1-3/M82 | 1.14048 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.11481 | |
3-2/M82 | 1.00252 | |
4-1-1/M82 | 1.3254 | |
4-1/M82 | 0.5491 | |
4-3-2/M82 | 0.92317 | |
4-3/M82 | 1.13795 | 0.268 |
5-3/M82 | 1.11311 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.86775 | |
7-2/M82 | 1.19368 | |
9-3-2/M82 | 0.78328 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.9677 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.08964 | 1 |
IL12-4/WTpooled | 1.06014 | 0.785 |
IL1-4/WTpooled | 1.02298 | |
WT/WTpooled | 1.08995 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9491 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93397 | 1 |
DC3000/delta hrp 6h | 1.11175 | 1 |
DC3000/delta hrp 12h | 1.06247 | 1 |
DC3000/delta hrp 24h | 0.90597 | 0.241 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.03346 | 0.598 |
DC3000 delta B/DC3000 delta AB | 1.04603 | 0.687 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.80983 | 1 |
Exp 36h | 1.33839 | 0.693 |
Exp 60h | 1.27968 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99572 | 1 |
Var 0h | 0.72204 | 1 |
Var 12h I row2-row1 | 1.05302 | 0.654 |
Var 12h NI row2-row1 | 0.8521 | 0.488 |
Var 36h I row2-row1 | 0.86638 | 0.575 |
Var 36h NI row2-row1 | 0.85343 | 0.522 |
Var 60h I row2-row1 | 1.60189 | 0.562 |
Var 60h NI row2-row1 | 1.38427 | 0.904 |
Time course 0hI-0hNI | 1.11732 | 0.719 |
Time course 12hI-12hNI | 1.04991 | 0.773 |
Time course 36hI-36hNI | 0.97758 | 0.504 |
Time course 60hI-60hNI | 1.14319 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92074 | 0.299 |
transgenic ySAMdc/azygous control (breaker) | 0.80141 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.03587 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04816 | 0.213 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.0546 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.80662 | 1 |
Manapal/WT (break) | 0.95901 | 1 |
Manapal/WT (red) | 0.89237 | 0.503 |
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