Expression of 1-1-3.1.16.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.002240.961
27DAP/17DAP1.095260.859
39DAP/27DAP0.964140.719
41DAP/39DAP1.284320.284
42DAP/41DAP1.108920.941
43DAP/42DAP0.899230.813
47DAP/43DAP1.293020.223
52DAP/47DAP0.922120.758
57DAP/52DAP0.867030.67

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.905410.109
17DAP/reference1.047420.355
27DAP/reference0.990670.725
39DAP/reference1.058380.262
41DAP/reference1.120280.122
42DAP/reference1.014530.842
43DAP/reference1.191440.014
47DAP/reference1.302810.001
52DAP/reference1.073030.576
57DAP/reference1.007621

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.958160.496
27DAP/17DAP1.012790.988
39DAP/27DAP1.064650.519
41DAP/39DAP1.10590.883
42DAP/41DAP0.958020.666
43DAP/42DAP1.089310.192
47DAP/43DAP1.010380.951
52DAP/47DAP1.020510.933
57DAP/52DAP1.00641
57DAP/7DAP1.231261

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.930030.122
17DAP/reference0.918310.031
27DAP/reference0.89320.019
39DAP/reference1.012570.601
41DAP/reference0.956390.194
42DAP/reference0.921110.1
43DAP/reference0.965120.266
47DAP/reference0.960710.504
52DAP/reference0.956290.254
57DAP/reference1.01281

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.974240.688
17DAP/reference0.967380.447
27DAP/reference0.858510.056
39DAP/reference0.850770.091
41DAP/reference0.82480.048
42DAP/reference0.827850.073
43DAP/reference1.032110.899
47DAP/reference0.950740.05
52DAP/reference0.963990.327
57DAP/reference1.035260.848

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.909510.087
17DAP/reference0.971720.636
27DAP/reference0.850770.021
39DAP/reference0.869340.021
41DAP/reference0.924320.167
42DAP/reference0.859880.025
43DAP/reference0.893970.158
47DAP/reference1.472460.009
52DAP/reference1.338310.509
57DAP/reference1.134780.401

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.810811
26DAP/20DAP0.950280.512
34DAP/26DAP1.072241
51DAP/34DAP0.867240.298
52DAP/51DAP1.018360.86
53DAP/52DAP1.092310.623
55DAP/53DAP0.981340.852
57DAP/55DAP0.93450.698
62DAP/57DAP1.072291
68DAP/62DAP0.761140.152
68DAP/14DAP0.887820.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.905970.224

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.436990.086
Mature Green Tomato/Ripe Tomato0.897960.377
Immature Eggplant/Mature Eggplant1.187050.096
Ripe Pepper/Ripe Tomato0.515460.293
Mature Eggplant/Ripe Tomato1.048871

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.11160.486
1-1-2/M820.97583
12-2/M82N/AN/A
12-4/M821.060520.611
1-3/M821.14048
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.11481
3-2/M821.00252
4-1-1/M821.3254
4-1/M820.5491
4-3-2/M820.92317
4-3/M821.137950.268
5-3/M821.113111
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.86775
7-2/M821.19368
9-3-2/M820.783280.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.96771
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.089641
IL12-4/WTpooled1.060140.785
IL1-4/WTpooled1.02298
WT/WTpooled1.089951

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.94911

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.933971
DC3000/delta hrp 6h1.111751
DC3000/delta hrp 12h1.062471
DC3000/delta hrp 24h0.905970.241

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.033460.598
DC3000 delta B/DC3000 delta AB1.046030.687

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.809831
Exp 36h1.338390.693
Exp 60h1.279680.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.995721
Var 0h0.722041
Var 12h I row2-row11.053020.654
Var 12h NI row2-row10.85210.488
Var 36h I row2-row10.866380.575
Var 36h NI row2-row10.853430.522
Var 60h I row2-row11.601890.562
Var 60h NI row2-row11.384270.904
Time course 0hI-0hNI1.117320.719
Time course 12hI-12hNI1.049910.773
Time course 36hI-36hNI0.977580.504
Time course 60hI-60hNI1.143190.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.920740.299
transgenic ySAMdc/azygous control (breaker)0.801410.173
transgenic ySAMdc/azygous control (red)1.035871

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.048160.213

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.05461

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.806621
Manapal/WT (break)0.959011
Manapal/WT (red)0.892370.503