Expression of 1-1-3.1.17.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.895010.475
27DAP/17DAP1.133681
39DAP/27DAP3.341910.033
41DAP/39DAP1.388340.483
42DAP/41DAP2.494370.08
43DAP/42DAP2.388820.703
47DAP/43DAP0.887920.609
52DAP/47DAP0.481820.057
57DAP/52DAP0.933140.926

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.940090.503
17DAP/reference1.427790.057
27DAP/reference1.04160.721
39DAP/reference0.864020.083
41DAP/reference1.092050.421
42DAP/reference1.302280.004
43DAP/reference0.937820.394
47DAP/reference1.176940.154
52DAP/reference1.262320.256
57DAP/reference1.037760.952

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.843620.323
27DAP/17DAP0.863720.58
39DAP/27DAP3.051820.016
41DAP/39DAP0.735060.024
42DAP/41DAP1.317750.026
43DAP/42DAP1.443550.014
47DAP/43DAP0.910310.339
52DAP/47DAP0.960880.763
57DAP/52DAP0.932970.463
57DAP/7DAP1.233560.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.147220.252
17DAP/reference0.757830.02
27DAP/reference0.781230.018
39DAP/reference0.510340.011
41DAP/reference0.599870.018
42DAP/reference0.746210.01
43DAP/reference0.764580.04
47DAP/reference0.699620.036
52DAP/reference0.643090.012
57DAP/reference0.566890.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.329660.187
17DAP/reference1.073210.839
27DAP/reference0.991770.598
39DAP/reference1.08820.956
41DAP/reference1.063920.536
42DAP/reference1.208930.118
43DAP/reference1.063690.885
47DAP/reference1.191470.164
52DAP/reference1.262470.106
57DAP/reference1.111790.705

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.262630.025
17DAP/reference0.918350.508
27DAP/reference0.572250.031
39DAP/reference0.917720.179
41DAP/reference0.858330.132
42DAP/reference0.907680.22
43DAP/reference0.958140.432
47DAP/reference1.096070.847
52DAP/reference0.838650.247
57DAP/reference1.143980.339

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.167050.966
26DAP/20DAP0.802040.512
34DAP/26DAP1.310520.819
51DAP/34DAP1.357550.207
52DAP/51DAP1.029330.915
53DAP/52DAP1.006131
55DAP/53DAP0.905550.325
57DAP/55DAP1.266920.301
62DAP/57DAP0.888870.681
68DAP/62DAP1.263781
68DAP/14DAP2.28581

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker19.62960.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.323250.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato2.21552
Mature Eggplant/Ripe Tomato0.29011

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.261110.742
1-1-2/M821.273691
12-2/M821.310071
12-4/M820.992821
1-3/M822.48
2-1-1/M821.445950.764
2-1/M821.169911
2-6/M821.904730.329
3-2/M821.070071
4-1-1/M821.360460.977
4-1/M820.74455
4-3-2/M822.371360.508
4-3/M821.085941
5-3/M820.967231
6-2/M82N/AN/A
6-3/M820.381380.796
7-1/M82N/AN/A
7-2/M821.599690.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.895130.321
IL2-6/WTpooled1.063520.659
IL7-5/WTpooled1.193790.792
IL7-3/WTpooled0.844660.283
IL12-4/WTpooled1.032040.891
IL1-4/WTpooled0.989591
WT/WTpooled1.145051

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.500410.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.112640.894
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.182791
DC3000/delta hrp 24h3.471430.022

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.332940.183
DC3000 delta B/DC3000 delta AB1.013720.983

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.9641
Var 0h1.028161
Var 12h I row2-row11.453770.228
Var 12h NI row2-row11.02921
Var 36h I row2-row11.167460.742
Var 36h NI row2-row11.141431
Var 60h I row2-row10.97750.952
Var 60h NI row2-row10.947370.977
Time course 0hI-0hNI1.063110.852
Time course 12hI-12hNI1.575160.005
Time course 36hI-36hNI2.27180.004
Time course 60hI-60hNI5.789070.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.729521

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.49850.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.209241
Manapal/WT (red)0.937660.728