Expression of 1-1-3.1.17.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03054 | 0.932 |
27DAP/17DAP | 1.16755 | 0.841 |
39DAP/27DAP | 0.97744 | 0.7 |
41DAP/39DAP | 1.44306 | 0.295 |
42DAP/41DAP | 1.06423 | 1 |
43DAP/42DAP | 0.99463 | 0.932 |
47DAP/43DAP | 1.06199 | 0.873 |
52DAP/47DAP | 1.23739 | 0.681 |
57DAP/52DAP | 0.9466 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99377 | 0.727 |
17DAP/reference | 1.03267 | 0.22 |
27DAP/reference | 0.98024 | 0.654 |
39DAP/reference | 1.01677 | 0.581 |
41DAP/reference | 1.00679 | 0.91 |
42DAP/reference | 0.93932 | 0.005 |
43DAP/reference | 1.03124 | 0.73 |
47DAP/reference | 0.96688 | 0.207 |
52DAP/reference | 0.88851 | 0.05 |
57DAP/reference | 0.87602 | 0.022 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01231 | 0.934 |
27DAP/17DAP | 0.96709 | 0.782 |
39DAP/27DAP | 1.02956 | 0.672 |
41DAP/39DAP | 1.07157 | 0.887 |
42DAP/41DAP | 1.01438 | 1 |
43DAP/42DAP | 1.0136 | 0.788 |
47DAP/43DAP | 1.00377 | 1 |
52DAP/47DAP | 1.04429 | 0.826 |
57DAP/52DAP | 1.01016 | 1 |
57DAP/7DAP | 1.08611 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90192 | 0.066 |
17DAP/reference | 0.91664 | 0.012 |
27DAP/reference | 0.94236 | 0.031 |
39DAP/reference | 0.95294 | 0.146 |
41DAP/reference | 0.9342 | 0.027 |
42DAP/reference | 0.94579 | 0.053 |
43DAP/reference | 0.95547 | 0.047 |
47DAP/reference | 0.85444 | 0.057 |
52DAP/reference | 0.9277 | 0.066 |
57DAP/reference | 0.92025 | 0.017 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9991 | 0.97 |
17DAP/reference | 1.01742 | 0.824 |
27DAP/reference | 0.96022 | 0.423 |
39DAP/reference | 0.91206 | 0.147 |
41DAP/reference | 0.78299 | 0.029 |
42DAP/reference | 0.92302 | 0.15 |
43DAP/reference | 1.03931 | 0.598 |
47DAP/reference | 0.91256 | 0.014 |
52DAP/reference | 0.98697 | 0.537 |
57DAP/reference | 1.10375 | 0.161 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99378 | 0.699 |
17DAP/reference | 0.9905 | 0.763 |
27DAP/reference | 0.97149 | 0.416 |
39DAP/reference | 0.93159 | 0.015 |
41DAP/reference | 0.96973 | 0.237 |
42DAP/reference | 0.89286 | 0.087 |
43DAP/reference | 0.91784 | 0.165 |
47DAP/reference | 0.94222 | 0.215 |
52DAP/reference | 0.90733 | 0.148 |
57DAP/reference | 0.72523 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99085 | 1 |
26DAP/20DAP | 0.89634 | 0.512 |
34DAP/26DAP | 0.95966 | 0.826 |
51DAP/34DAP | 0.96002 | 0.618 |
52DAP/51DAP | 1.01982 | 0.821 |
53DAP/52DAP | 1.0174 | 1 |
55DAP/53DAP | 0.98965 | 0.886 |
57DAP/55DAP | 0.86056 | 0.49 |
62DAP/57DAP | 1.06398 | 0.723 |
68DAP/62DAP | 1.04413 | 0.914 |
68DAP/14DAP | 0.93969 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98839 | 0.665 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.77417 | 0.279 |
Mature Green Tomato/Ripe Tomato | 0.90669 | 0.256 |
Immature Eggplant/Mature Eggplant | 1.23093 | 0.072 |
Ripe Pepper/Ripe Tomato | 1.11091 | |
Mature Eggplant/Ripe Tomato | 1.41599 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00707 | 1 |
1-1-2/M82 | 1.02218 | |
12-2/M82 | 1.14051 | 0.519 |
12-4/M82 | 0.91843 | 1 |
1-3/M82 | 0.9424 | 1 |
2-1-1/M82 | 0.99893 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.98866 | 1 |
3-2/M82 | 1.03769 | |
4-1-1/M82 | 0.92265 | 1 |
4-1/M82 | 0.9543 | 1 |
4-3-2/M82 | 0.70967 | 0.487 |
4-3/M82 | 0.88203 | 0.611 |
5-3/M82 | 0.97724 | 1 |
6-2/M82 | 1.04733 | 1 |
6-3/M82 | 0.99225 | 1 |
7-1/M82 | 0.89644 | 0.509 |
7-2/M82 | 0.91116 | 0.599 |
9-3-2/M82 | 0.86927 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.84432 | |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0764 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05709 | 0.921 |
DC3000/delta hrp 6h | 1.15716 | 1 |
DC3000/delta hrp 12h | 1.19007 | 1 |
DC3000/delta hrp 24h | 0.93588 | 0.447 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.0063 | 1 |
DC3000 delta B/DC3000 delta AB | 0.96862 | 0.766 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.80508 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.37291 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95416 | 1 |
Var 0h | 0.86716 | 1 |
Var 12h I row2-row1 | 1.11266 | 0.196 |
Var 12h NI row2-row1 | 1.032 | 1 |
Var 36h I row2-row1 | 1.02422 | 1 |
Var 36h NI row2-row1 | 0.93797 | 0.549 |
Var 60h I row2-row1 | 1.30459 | 0.562 |
Var 60h NI row2-row1 | 1.04421 | 1 |
Time course 0hI-0hNI | 1.16802 | 0.833 |
Time course 12hI-12hNI | 1.04441 | 0.756 |
Time course 36hI-36hNI | 0.99879 | 0.826 |
Time course 60hI-60hNI | 1.06923 | 0.254 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.93459 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 1.24734 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.02545 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.19734 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.98481 | 1 |
Manapal/WT (break) | 0.97593 | 1 |
Manapal/WT (red) | 0.87213 | 0.181 |
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