Expression of 1-1-3.1.17.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.030540.932
27DAP/17DAP1.167550.841
39DAP/27DAP0.977440.7
41DAP/39DAP1.443060.295
42DAP/41DAP1.064231
43DAP/42DAP0.994630.932
47DAP/43DAP1.061990.873
52DAP/47DAP1.237390.681
57DAP/52DAP0.94660.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.993770.727
17DAP/reference1.032670.22
27DAP/reference0.980240.654
39DAP/reference1.016770.581
41DAP/reference1.006790.91
42DAP/reference0.939320.005
43DAP/reference1.031240.73
47DAP/reference0.966880.207
52DAP/reference0.888510.05
57DAP/reference0.876020.022

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.012310.934
27DAP/17DAP0.967090.782
39DAP/27DAP1.029560.672
41DAP/39DAP1.071570.887
42DAP/41DAP1.014381
43DAP/42DAP1.01360.788
47DAP/43DAP1.003771
52DAP/47DAP1.044290.826
57DAP/52DAP1.010161
57DAP/7DAP1.086111

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.901920.066
17DAP/reference0.916640.012
27DAP/reference0.942360.031
39DAP/reference0.952940.146
41DAP/reference0.93420.027
42DAP/reference0.945790.053
43DAP/reference0.955470.047
47DAP/reference0.854440.057
52DAP/reference0.92770.066
57DAP/reference0.920250.017

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.99910.97
17DAP/reference1.017420.824
27DAP/reference0.960220.423
39DAP/reference0.912060.147
41DAP/reference0.782990.029
42DAP/reference0.923020.15
43DAP/reference1.039310.598
47DAP/reference0.912560.014
52DAP/reference0.986970.537
57DAP/reference1.103750.161

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.993780.699
17DAP/reference0.99050.763
27DAP/reference0.971490.416
39DAP/reference0.931590.015
41DAP/reference0.969730.237
42DAP/reference0.892860.087
43DAP/reference0.917840.165
47DAP/reference0.942220.215
52DAP/reference0.907330.148
57DAP/reference0.725230.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.990851
26DAP/20DAP0.896340.512
34DAP/26DAP0.959660.826
51DAP/34DAP0.960020.618
52DAP/51DAP1.019820.821
53DAP/52DAP1.01741
55DAP/53DAP0.989650.886
57DAP/55DAP0.860560.49
62DAP/57DAP1.063980.723
68DAP/62DAP1.044130.914
68DAP/14DAP0.939691

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.988390.665

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.774170.279
Mature Green Tomato/Ripe Tomato0.906690.256
Immature Eggplant/Mature Eggplant1.230930.072
Ripe Pepper/Ripe Tomato1.11091
Mature Eggplant/Ripe Tomato1.415990.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.007071
1-1-2/M821.02218
12-2/M821.140510.519
12-4/M820.918431
1-3/M820.94241
2-1-1/M820.99893
2-1/M82N/AN/A
2-6/M820.988661
3-2/M821.03769
4-1-1/M820.922651
4-1/M820.95431
4-3-2/M820.709670.487
4-3/M820.882030.611
5-3/M820.977241
6-2/M821.047331
6-3/M820.992251
7-1/M820.896440.509
7-2/M820.911160.599
9-3-2/M820.869270.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.84432
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.07640.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.057090.921
DC3000/delta hrp 6h1.157161
DC3000/delta hrp 12h1.190071
DC3000/delta hrp 24h0.935880.447

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.00631
DC3000 delta B/DC3000 delta AB0.968620.766

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.805081
Exp 36hN/AN/A
Exp 60h1.372910.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.954161
Var 0h0.867161
Var 12h I row2-row11.112660.196
Var 12h NI row2-row11.0321
Var 36h I row2-row11.024221
Var 36h NI row2-row10.937970.549
Var 60h I row2-row11.304590.562
Var 60h NI row2-row11.044211
Time course 0hI-0hNI1.168020.833
Time course 12hI-12hNI1.044410.756
Time course 36hI-36hNI0.998790.826
Time course 60hI-60hNI1.069230.254

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.934590.428
transgenic ySAMdc/azygous control (breaker)1.247340.178
transgenic ySAMdc/azygous control (red)1.025450.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.197340.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.984811
Manapal/WT (break)0.975931
Manapal/WT (red)0.872130.181