Expression of 1-1-3.1.18.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.183780.863
27DAP/17DAP1.087770.967
39DAP/27DAP1.411850.906
41DAP/39DAP1.091370.743
42DAP/41DAP1.222861
43DAP/42DAP1.149951
47DAP/43DAP1.922670.715
52DAP/47DAP1.019240.712
57DAP/52DAP1.14620.978

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.89126
27DAP/referenceN/AN/A
39DAP/reference0.43932
41DAP/reference0.812970.542
42DAP/reference0.926580.242
43DAP/reference1.149090.861
47DAP/reference1.17269
52DAP/reference0.781440.012
57DAP/reference0.737250.106

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.959290.542
27DAP/17DAP1.000150.969
39DAP/27DAP1.141940.378
41DAP/39DAP1.05861
42DAP/41DAP1.111310.487
43DAP/42DAP1.146160.324
47DAP/43DAP1.093680.772
52DAP/47DAP1.025350.939
57DAP/52DAP0.913210.356
57DAP/7DAP1.13971

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.343820.193
17DAP/reference1.04950.437
27DAP/reference0.957510.348
39DAP/reference1.225590.282
41DAP/reference1.282370.054
42DAP/reference1.172720.174
43DAP/reference1.27080.035
47DAP/reference1.467790.038
52DAP/reference1.365910.017
57DAP/reference1.319210.094

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.952280.623
17DAP/reference1.119860.874
27DAP/reference0.81210.056
39DAP/reference0.936920.168
41DAP/reference1.772940.005
42DAP/reference2.32521
43DAP/reference0.985240.814
47DAP/reference0.4306
52DAP/reference1.039760.629
57DAP/reference1.140740.269

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.996010.75
17DAP/reference1.131410.189
27DAP/reference1.229950.198
39DAP/reference1.378710.006
41DAP/reference1.014561
42DAP/reference1.042490.961
43DAP/reference1.102480.418
47DAP/referenceN/AN/A
52DAP/reference1.255430.086
57DAP/reference0.727690.43

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.814750.585
26DAP/20DAP0.99111
34DAP/26DAP1.064690.819
51DAP/34DAP0.978570.824
52DAP/51DAP1.070690.542
53DAP/52DAP1.019390.961
55DAP/53DAP0.991060.894
57DAP/55DAP0.790090.249
62DAP/57DAP1.057790.678
68DAP/62DAP0.969010.81
68DAP/14DAP0.963751

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.946110.443

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.445580.082
Mature Green Tomato/Ripe Tomato1.924050.632
Immature Eggplant/Mature Eggplant2.598870.05
Ripe Pepper/Ripe Tomato1.039521
Mature Eggplant/Ripe Tomato1.134611

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.028161
1-1-2/M820.89778
12-2/M821.145331
12-4/M821.060891
1-3/M820.857840.378
2-1-1/M82N/AN/A
2-1/M821.020021
2-6/M821.081410.695
3-2/M820.81678
4-1-1/M821.09310.977
4-1/M820.97828
4-3-2/M820.757980.698
4-3/M820.940550.611
5-3/M820.932961
6-2/M820.97171
6-3/M820.87799
7-1/M82N/AN/A
7-2/M820.930390.54
9-3-2/M820.37211

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.290890.277
IL2-6/WTpooled0.979951
IL7-5/WTpooled0.769031
IL7-3/WTpooled0.787360.294
IL12-4/WTpooled0.995231
IL1-4/WTpooled0.855790.699
WT/WTpooled1.022641

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.174230.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.036940.921
DC3000/delta hrp 6h1.131641
DC3000/delta hrp 12h1.060821
DC3000/delta hrp 24h1.002791

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.346860.333
DC3000 delta B/DC3000 delta AB1.039960.544

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.074551
Exp 36h1.251680.693
Exp 60h1.190191

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98321
Var 0h1.243910.936
Var 12h I row2-row11.194130.283
Var 12h NI row2-row10.964070.906
Var 36h I row2-row10.896550.805
Var 36h NI row2-row10.994981
Var 60h I row2-row11.08530.562
Var 60h NI row2-row11.132880.904
Time course 0hI-0hNI1.093520.662
Time course 12hI-12hNI1.094840.56
Time course 36hI-36hNI1.046020.316
Time course 60hI-60hNI1.163990.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.834331
Manapal/WT (break)1.016111
Manapal/WT (red)0.79960.199