Expression of 1-1-3.1.18.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18378 | 0.863 |
27DAP/17DAP | 1.08777 | 0.967 |
39DAP/27DAP | 1.41185 | 0.906 |
41DAP/39DAP | 1.09137 | 0.743 |
42DAP/41DAP | 1.22286 | 1 |
43DAP/42DAP | 1.14995 | 1 |
47DAP/43DAP | 1.92267 | 0.715 |
52DAP/47DAP | 1.01924 | 0.712 |
57DAP/52DAP | 1.1462 | 0.978 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | 0.89126 | |
27DAP/reference | N/A | N/A |
39DAP/reference | 0.43932 | |
41DAP/reference | 0.81297 | 0.542 |
42DAP/reference | 0.92658 | 0.242 |
43DAP/reference | 1.14909 | 0.861 |
47DAP/reference | 1.17269 | |
52DAP/reference | 0.78144 | 0.012 |
57DAP/reference | 0.73725 | 0.106 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95929 | 0.542 |
27DAP/17DAP | 1.00015 | 0.969 |
39DAP/27DAP | 1.14194 | 0.378 |
41DAP/39DAP | 1.0586 | 1 |
42DAP/41DAP | 1.11131 | 0.487 |
43DAP/42DAP | 1.14616 | 0.324 |
47DAP/43DAP | 1.09368 | 0.772 |
52DAP/47DAP | 1.02535 | 0.939 |
57DAP/52DAP | 0.91321 | 0.356 |
57DAP/7DAP | 1.1397 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34382 | 0.193 |
17DAP/reference | 1.0495 | 0.437 |
27DAP/reference | 0.95751 | 0.348 |
39DAP/reference | 1.22559 | 0.282 |
41DAP/reference | 1.28237 | 0.054 |
42DAP/reference | 1.17272 | 0.174 |
43DAP/reference | 1.2708 | 0.035 |
47DAP/reference | 1.46779 | 0.038 |
52DAP/reference | 1.36591 | 0.017 |
57DAP/reference | 1.31921 | 0.094 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95228 | 0.623 |
17DAP/reference | 1.11986 | 0.874 |
27DAP/reference | 0.8121 | 0.056 |
39DAP/reference | 0.93692 | 0.168 |
41DAP/reference | 1.77294 | 0.005 |
42DAP/reference | 2.32521 | |
43DAP/reference | 0.98524 | 0.814 |
47DAP/reference | 0.4306 | |
52DAP/reference | 1.03976 | 0.629 |
57DAP/reference | 1.14074 | 0.269 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99601 | 0.75 |
17DAP/reference | 1.13141 | 0.189 |
27DAP/reference | 1.22995 | 0.198 |
39DAP/reference | 1.37871 | 0.006 |
41DAP/reference | 1.01456 | 1 |
42DAP/reference | 1.04249 | 0.961 |
43DAP/reference | 1.10248 | 0.418 |
47DAP/reference | N/A | N/A |
52DAP/reference | 1.25543 | 0.086 |
57DAP/reference | 0.72769 | 0.43 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.81475 | 0.585 |
26DAP/20DAP | 0.9911 | 1 |
34DAP/26DAP | 1.06469 | 0.819 |
51DAP/34DAP | 0.97857 | 0.824 |
52DAP/51DAP | 1.07069 | 0.542 |
53DAP/52DAP | 1.01939 | 0.961 |
55DAP/53DAP | 0.99106 | 0.894 |
57DAP/55DAP | 0.79009 | 0.249 |
62DAP/57DAP | 1.05779 | 0.678 |
68DAP/62DAP | 0.96901 | 0.81 |
68DAP/14DAP | 0.96375 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.94611 | 0.443 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.44558 | 0.082 |
Mature Green Tomato/Ripe Tomato | 1.92405 | 0.632 |
Immature Eggplant/Mature Eggplant | 2.59887 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.03952 | 1 |
Mature Eggplant/Ripe Tomato | 1.13461 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02816 | 1 |
1-1-2/M82 | 0.89778 | |
12-2/M82 | 1.14533 | 1 |
12-4/M82 | 1.06089 | 1 |
1-3/M82 | 0.85784 | 0.378 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | 1.02002 | 1 |
2-6/M82 | 1.08141 | 0.695 |
3-2/M82 | 0.81678 | |
4-1-1/M82 | 1.0931 | 0.977 |
4-1/M82 | 0.97828 | |
4-3-2/M82 | 0.75798 | 0.698 |
4-3/M82 | 0.94055 | 0.611 |
5-3/M82 | 0.93296 | 1 |
6-2/M82 | 0.9717 | 1 |
6-3/M82 | 0.87799 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.93039 | 0.54 |
9-3-2/M82 | 0.37211 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.29089 | 0.277 |
IL2-6/WTpooled | 0.97995 | 1 |
IL7-5/WTpooled | 0.76903 | 1 |
IL7-3/WTpooled | 0.78736 | 0.294 |
IL12-4/WTpooled | 0.99523 | 1 |
IL1-4/WTpooled | 0.85579 | 0.699 |
WT/WTpooled | 1.02264 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.17423 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03694 | 0.921 |
DC3000/delta hrp 6h | 1.13164 | 1 |
DC3000/delta hrp 12h | 1.06082 | 1 |
DC3000/delta hrp 24h | 1.00279 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.34686 | 0.333 |
DC3000 delta B/DC3000 delta AB | 1.03996 | 0.544 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07455 | 1 |
Exp 36h | 1.25168 | 0.693 |
Exp 60h | 1.19019 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9832 | 1 |
Var 0h | 1.24391 | 0.936 |
Var 12h I row2-row1 | 1.19413 | 0.283 |
Var 12h NI row2-row1 | 0.96407 | 0.906 |
Var 36h I row2-row1 | 0.89655 | 0.805 |
Var 36h NI row2-row1 | 0.99498 | 1 |
Var 60h I row2-row1 | 1.0853 | 0.562 |
Var 60h NI row2-row1 | 1.13288 | 0.904 |
Time course 0hI-0hNI | 1.09352 | 0.662 |
Time course 12hI-12hNI | 1.09484 | 0.56 |
Time course 36hI-36hNI | 1.04602 | 0.316 |
Time course 60hI-60hNI | 1.16399 | 0.019 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83433 | 1 |
Manapal/WT (break) | 1.01611 | 1 |
Manapal/WT (red) | 0.7996 | 0.199 |
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