Expression of 1-1-3.1.18.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04939 | 0.878 |
27DAP/17DAP | 1.11898 | 0.857 |
39DAP/27DAP | 0.93888 | 0.682 |
41DAP/39DAP | 0.87601 | 0.558 |
42DAP/41DAP | 1.07603 | 0.967 |
43DAP/42DAP | 1.13005 | 0.948 |
47DAP/43DAP | 1.15894 | 0.618 |
52DAP/47DAP | 1.21556 | 0.662 |
57DAP/52DAP | 0.93844 | 0.936 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01801 | 0.846 |
17DAP/reference | 1.11132 | 0.016 |
27DAP/reference | 1.03084 | 0.648 |
39DAP/reference | 1.06839 | 0.218 |
41DAP/reference | 1.14379 | 0.014 |
42DAP/reference | 0.98126 | 0.337 |
43DAP/reference | 1.02836 | 0.547 |
47DAP/reference | 1.06594 | 0.161 |
52DAP/reference | 0.95822 | 0.35 |
57DAP/reference | 0.97561 | 0.435 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87759 | 0.442 |
27DAP/17DAP | 0.97678 | 0.919 |
39DAP/27DAP | 1.0577 | 0.751 |
41DAP/39DAP | 1.07044 | 1 |
42DAP/41DAP | 1.03106 | 0.991 |
43DAP/42DAP | 1.07323 | 0.627 |
47DAP/43DAP | 1.26655 | 0.572 |
52DAP/47DAP | 1.00082 | 0.962 |
57DAP/52DAP | 0.89576 | 0.298 |
57DAP/7DAP | 0.9701 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95187 | 0.27 |
17DAP/reference | 0.97132 | 0.144 |
27DAP/reference | 0.96728 | 0.055 |
39DAP/reference | 0.99538 | 0.745 |
41DAP/reference | 1.05126 | 0.314 |
42DAP/reference | 0.9969 | 0.751 |
43DAP/reference | 1.00969 | 0.83 |
47DAP/reference | 0.8452 | 0.101 |
52DAP/reference | 1.00928 | 0.886 |
57DAP/reference | 0.99442 | 0.53 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97818 | 0.623 |
17DAP/reference | 1.00287 | 1 |
27DAP/reference | 0.96946 | 0.438 |
39DAP/reference | 0.97479 | 0.469 |
41DAP/reference | 0.92917 | 0.212 |
42DAP/reference | 0.90206 | 0.013 |
43DAP/reference | 1.08805 | 0.38 |
47DAP/reference | 0.97911 | 0.4 |
52DAP/reference | 1.05676 | 0.181 |
57DAP/reference | 1.11352 | 0.04 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93299 | 0.048 |
17DAP/reference | 0.95829 | 0.452 |
27DAP/reference | 0.99429 | 0.657 |
39DAP/reference | 0.99515 | 0.693 |
41DAP/reference | 0.91788 | 0.237 |
42DAP/reference | 0.85677 | 0.172 |
43DAP/reference | 0.90437 | 0.188 |
47DAP/reference | 0.88852 | 0.231 |
52DAP/reference | 0.9605 | 0.505 |
57DAP/reference | 0.69183 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98289 | 1 |
26DAP/20DAP | 0.88688 | 0.512 |
34DAP/26DAP | 0.92714 | 0.857 |
51DAP/34DAP | 1.0264 | 0.917 |
52DAP/51DAP | 1.17495 | 0.439 |
53DAP/52DAP | 1.19915 | 0.37 |
55DAP/53DAP | 1.12568 | 0.244 |
57DAP/55DAP | 1.06704 | 0.865 |
62DAP/57DAP | 0.89621 | 0.681 |
68DAP/62DAP | 0.98412 | 0.863 |
68DAP/14DAP | 0.884 | 0.086 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.89323 | 0.304 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.96313 | 0.71 |
Mature Green Tomato/Ripe Tomato | 0.4805 | 0.025 |
Immature Eggplant/Mature Eggplant | 0.51571 | 0.089 |
Ripe Pepper/Ripe Tomato | 2.11102 | |
Mature Eggplant/Ripe Tomato | 1.66309 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93268 | 0.841 |
1-1-2/M82 | 1.03046 | 1 |
12-2/M82 | 0.90862 | 0.862 |
12-4/M82 | 1.00913 | 1 |
1-3/M82 | 1.03352 | 0.26 |
2-1-1/M82 | 0.95549 | 0.465 |
2-1/M82 | 1.10378 | 1 |
2-6/M82 | 0.96842 | 1 |
3-2/M82 | 1.03005 | |
4-1-1/M82 | 1.15033 | 0.72 |
4-1/M82 | 1.0089 | |
4-3-2/M82 | 0.88676 | |
4-3/M82 | 0.98414 | 1 |
5-3/M82 | 0.92182 | 0.642 |
6-2/M82 | 1.01416 | 1 |
6-3/M82 | 1.04009 | 1 |
7-1/M82 | 0.97422 | 1 |
7-2/M82 | 0.95163 | 0.881 |
9-3-2/M82 | 1.04523 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02724 | 0.921 |
DC3000/delta hrp 6h | 1.02605 | 1 |
DC3000/delta hrp 12h | 0.99842 | 1 |
DC3000/delta hrp 24h | 1.00552 | 0.821 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.06481 | 0.648 |
DC3000 delta B/DC3000 delta AB | 0.95585 | 0.693 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04244 | 1 |
Exp 36h | 0.84533 | 0.589 |
Exp 60h | 0.66284 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.94483 | 1 |
Var 0h | 1.37554 | 0.594 |
Var 12h I row2-row1 | 1.10893 | 0.406 |
Var 12h NI row2-row1 | 0.75868 | 0.546 |
Var 36h I row2-row1 | 0.99082 | 1 |
Var 36h NI row2-row1 | 1.30611 | 1 |
Var 60h I row2-row1 | 1.13089 | 0.562 |
Var 60h NI row2-row1 | 1.0913 | 1 |
Time course 0hI-0hNI | 1.17295 | 0.764 |
Time course 12hI-12hNI | 1.03884 | 0.85 |
Time course 36hI-36hNI | 1.06418 | 0.316 |
Time course 60hI-60hNI | 1.76099 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08721 | 0.305 |
transgenic ySAMdc/azygous control (breaker) | 1.30971 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.08785 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9443 | 0.074 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.1882 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.14037 | 0.105 |
Manapal/WT (break) | 1.06501 | 1 |
Manapal/WT (red) | 0.80741 | 0.315 |
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