Expression of 1-1-3.1.18.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.049390.878
27DAP/17DAP1.118980.857
39DAP/27DAP0.938880.682
41DAP/39DAP0.876010.558
42DAP/41DAP1.076030.967
43DAP/42DAP1.130050.948
47DAP/43DAP1.158940.618
52DAP/47DAP1.215560.662
57DAP/52DAP0.938440.936

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.018010.846
17DAP/reference1.111320.016
27DAP/reference1.030840.648
39DAP/reference1.068390.218
41DAP/reference1.143790.014
42DAP/reference0.981260.337
43DAP/reference1.028360.547
47DAP/reference1.065940.161
52DAP/reference0.958220.35
57DAP/reference0.975610.435

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.877590.442
27DAP/17DAP0.976780.919
39DAP/27DAP1.05770.751
41DAP/39DAP1.070441
42DAP/41DAP1.031060.991
43DAP/42DAP1.073230.627
47DAP/43DAP1.266550.572
52DAP/47DAP1.000820.962
57DAP/52DAP0.895760.298
57DAP/7DAP0.97011

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.951870.27
17DAP/reference0.971320.144
27DAP/reference0.967280.055
39DAP/reference0.995380.745
41DAP/reference1.051260.314
42DAP/reference0.99690.751
43DAP/reference1.009690.83
47DAP/reference0.84520.101
52DAP/reference1.009280.886
57DAP/reference0.994420.53

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.978180.623
17DAP/reference1.002871
27DAP/reference0.969460.438
39DAP/reference0.974790.469
41DAP/reference0.929170.212
42DAP/reference0.902060.013
43DAP/reference1.088050.38
47DAP/reference0.979110.4
52DAP/reference1.056760.181
57DAP/reference1.113520.04

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.932990.048
17DAP/reference0.958290.452
27DAP/reference0.994290.657
39DAP/reference0.995150.693
41DAP/reference0.917880.237
42DAP/reference0.856770.172
43DAP/reference0.904370.188
47DAP/reference0.888520.231
52DAP/reference0.96050.505
57DAP/reference0.691830.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.982891
26DAP/20DAP0.886880.512
34DAP/26DAP0.927140.857
51DAP/34DAP1.02640.917
52DAP/51DAP1.174950.439
53DAP/52DAP1.199150.37
55DAP/53DAP1.125680.244
57DAP/55DAP1.067040.865
62DAP/57DAP0.896210.681
68DAP/62DAP0.984120.863
68DAP/14DAP0.8840.086

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.893230.304

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.963130.71
Mature Green Tomato/Ripe Tomato0.48050.025
Immature Eggplant/Mature Eggplant0.515710.089
Ripe Pepper/Ripe Tomato2.11102
Mature Eggplant/Ripe Tomato1.663090.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.932680.841
1-1-2/M821.030461
12-2/M820.908620.862
12-4/M821.009131
1-3/M821.033520.26
2-1-1/M820.955490.465
2-1/M821.103781
2-6/M820.968421
3-2/M821.03005
4-1-1/M821.150330.72
4-1/M821.0089
4-3-2/M820.88676
4-3/M820.984141
5-3/M820.921820.642
6-2/M821.014161
6-3/M821.040091
7-1/M820.974221
7-2/M820.951630.881
9-3-2/M821.04523

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.027240.921
DC3000/delta hrp 6h1.026051
DC3000/delta hrp 12h0.998421
DC3000/delta hrp 24h1.005520.821

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.064810.648
DC3000 delta B/DC3000 delta AB0.955850.693

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.042441
Exp 36h0.845330.589
Exp 60h0.662840.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.944831
Var 0h1.375540.594
Var 12h I row2-row11.108930.406
Var 12h NI row2-row10.758680.546
Var 36h I row2-row10.990821
Var 36h NI row2-row11.306111
Var 60h I row2-row11.130890.562
Var 60h NI row2-row11.09131
Time course 0hI-0hNI1.172950.764
Time course 12hI-12hNI1.038840.85
Time course 36hI-36hNI1.064180.316
Time course 60hI-60hNI1.760990.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.087210.305
transgenic ySAMdc/azygous control (breaker)1.309710.248
transgenic ySAMdc/azygous control (red)1.087850.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.94430.074

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.18820.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.140370.105
Manapal/WT (break)1.065011
Manapal/WT (red)0.807410.315