Expression of 1-1-3.1.18.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13847 | 0.561 |
27DAP/17DAP | 1.79333 | 0.45 |
39DAP/27DAP | 1.062 | 0.769 |
41DAP/39DAP | 0.9583 | 0.769 |
42DAP/41DAP | 1.05521 | 0.999 |
43DAP/42DAP | 1.65122 | 0.671 |
47DAP/43DAP | 0.96791 | 0.671 |
52DAP/47DAP | 1.09028 | 0.976 |
57DAP/52DAP | 1.32667 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97296 | 0.442 |
17DAP/reference | 0.96171 | 0.448 |
27DAP/reference | 0.94556 | 0.232 |
39DAP/reference | 1.03701 | 0.445 |
41DAP/reference | 0.97203 | 0.667 |
42DAP/reference | 0.89597 | 0.002 |
43DAP/reference | 0.98613 | 0.745 |
47DAP/reference | 0.96573 | 0.224 |
52DAP/reference | 0.95859 | 0.35 |
57DAP/reference | 0.91964 | 0.118 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93891 | 0.454 |
27DAP/17DAP | 1.0441 | 0.863 |
39DAP/27DAP | 1.03498 | 0.677 |
41DAP/39DAP | 1.02518 | 1 |
42DAP/41DAP | 1.03862 | 0.872 |
43DAP/42DAP | 1.02767 | 0.746 |
47DAP/43DAP | 1.0443 | 0.837 |
52DAP/47DAP | 1.06444 | 0.776 |
57DAP/52DAP | 0.99713 | 0.887 |
57DAP/7DAP | 1.0531 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89243 | 0.138 |
17DAP/reference | 0.82486 | 0.012 |
27DAP/reference | 0.74855 | 0.01 |
39DAP/reference | 0.90932 | 0.039 |
41DAP/reference | 0.87021 | 0.029 |
42DAP/reference | 0.79448 | 0.015 |
43DAP/reference | 0.92275 | 0.132 |
47DAP/reference | 0.97753 | 0.671 |
52DAP/reference | 0.88009 | 0.053 |
57DAP/reference | 0.90334 | 0.03 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00435 | 0.933 |
17DAP/reference | 0.94066 | 0.223 |
27DAP/reference | 0.89572 | 0.144 |
39DAP/reference | 0.88095 | 0.064 |
41DAP/reference | 1.04985 | 1 |
42DAP/reference | 0.78693 | 0.012 |
43DAP/reference | 1.02696 | 0.662 |
47DAP/reference | 0.85955 | 0.015 |
52DAP/reference | 0.95368 | 0.101 |
57DAP/reference | 0.96958 | 0.408 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77029 | 0.034 |
17DAP/reference | 0.95088 | 0.433 |
27DAP/reference | 0.87714 | 0.038 |
39DAP/reference | 0.8691 | 0.023 |
41DAP/reference | 0.94475 | 0.371 |
42DAP/reference | 0.81072 | 0.016 |
43DAP/reference | 0.87555 | 0.028 |
47DAP/reference | 0.97076 | 0.452 |
52DAP/reference | 0.85638 | 0.177 |
57DAP/reference | 0.98704 | 0.623 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99742 | 1 |
26DAP/20DAP | 0.95457 | 1 |
34DAP/26DAP | 0.99839 | 1 |
51DAP/34DAP | 0.95154 | 0.606 |
52DAP/51DAP | 1.03164 | 0.708 |
53DAP/52DAP | 1.01328 | 0.921 |
55DAP/53DAP | 0.98578 | 0.852 |
57DAP/55DAP | 1.08034 | 0.935 |
62DAP/57DAP | 1.05006 | 1 |
68DAP/62DAP | 1.27019 | 0.298 |
68DAP/14DAP | 1.26957 | 0.403 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.9798 | 0.576 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.74633 | 0.207 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.11691 | 0.13 |
Ripe Pepper/Ripe Tomato | 1.74039 | 1 |
Mature Eggplant/Ripe Tomato | 1.19879 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87675 | 0.907 |
1-1-2/M82 | 0.89908 | 0.958 |
12-2/M82 | 0.98191 | 0.955 |
12-4/M82 | 1.08439 | 0.694 |
1-3/M82 | 1.01756 | 1 |
2-1-1/M82 | 0.96255 | |
2-1/M82 | 1.22445 | 1 |
2-6/M82 | 0.99975 | 1 |
3-2/M82 | 0.83681 | |
4-1-1/M82 | 1.12703 | 1 |
4-1/M82 | 0.96305 | |
4-3-2/M82 | 0.80843 | |
4-3/M82 | 1.18234 | 1 |
5-3/M82 | 0.89652 | 0.447 |
6-2/M82 | 0.67737 | |
6-3/M82 | 0.97756 | 1 |
7-1/M82 | 0.84558 | |
7-2/M82 | 1.09274 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.86349 | |
IL2-6/WTpooled | 1.30094 | 0.456 |
IL7-5/WTpooled | 0.8164 | 1 |
IL7-3/WTpooled | 0.96114 | 1 |
IL12-4/WTpooled | 1.28339 | 0.557 |
IL1-4/WTpooled | 0.97983 | 1 |
WT/WTpooled | 1.03935 | 0.957 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.12646 | 0.222 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96322 | 1 |
DC3000/delta hrp 6h | 1.16718 | 1 |
DC3000/delta hrp 12h | 1.1346 | 1 |
DC3000/delta hrp 24h | 1.12004 | 0.483 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.0419 | 0.29 |
DC3000 delta B/DC3000 delta AB | 1.02484 | 0.655 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.28275 | 1 |
Exp 36h | 1.07106 | 1 |
Exp 60h | 1.14113 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99276 | 1 |
Var 0h | 0.95311 | 1 |
Var 12h I row2-row1 | 1.06715 | 0.443 |
Var 12h NI row2-row1 | 1.02466 | 1 |
Var 36h I row2-row1 | 0.85849 | 1 |
Var 36h NI row2-row1 | 0.98988 | 0.852 |
Var 60h I row2-row1 | 1.37393 | 0.562 |
Var 60h NI row2-row1 | 1.00135 | 1 |
Time course 0hI-0hNI | 1.07505 | 0.799 |
Time course 12hI-12hNI | 1.04773 | 0.709 |
Time course 36hI-36hNI | 1.17894 | 0.089 |
Time course 60hI-60hNI | 1.05093 | 0.495 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99078 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.87083 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.9772 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99689 | 0.784 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.95066 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.87721 | 1 |
Manapal/WT (break) | 0.98236 | 1 |
Manapal/WT (red) | 0.87387 | 0.424 |
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