Expression of 1-1-3.1.19.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.575330.098
27DAP/17DAP1.084690.89
39DAP/27DAP1.816060.073
41DAP/39DAP0.653580.083
42DAP/41DAP1.075510.997
43DAP/42DAP1.058670.937
47DAP/43DAP0.955560.754
52DAP/47DAP1.079810.953
57DAP/52DAP1.180.964

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.273740.03
17DAP/reference1.324550.185
27DAP/reference1.479690.007
39DAP/reference1.250150.497
41DAP/reference1.950150.014
42DAP/reference1.534530.01
43DAP/reference1.389660.787
47DAP/reference1.386270.001
52DAP/reference1.315370.017
57DAP/reference0.90122

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.160920.075
27DAP/17DAP1.016690.957
39DAP/27DAP0.959180.469
41DAP/39DAP1.037010.853
42DAP/41DAP1.091680.663
43DAP/42DAP0.96950.367
47DAP/43DAP1.007580.956
52DAP/47DAP1.036830.851
57DAP/52DAP1.012591
57DAP/7DAP1.007121

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.023910.857
17DAP/reference1.058380.022
27DAP/reference1.174910.007
39DAP/reference1.104220.062
41DAP/reference1.140650.021
42DAP/reference1.172750.059
43DAP/reference1.215370.008
47DAP/reference1.251820.051
52DAP/reference1.145050.031
57DAP/reference1.344730.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.237770.089
17DAP/reference1.431450.013
27DAP/reference1.407380.041
39DAP/reference1.537480.013
41DAP/reference1.278490.204
42DAP/reference1.425810.008
43DAP/reference1.446470.031
47DAP/reference1.377730.008
52DAP/reference1.46680.006
57DAP/reference1.591560.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.946840.23
17DAP/reference1.072350.347
27DAP/reference1.171050.039
39DAP/reference1.249230.016
41DAP/reference1.074590.093
42DAP/reference1.225710.054
43DAP/reference1.250090.056
47DAP/reference1.364950.016
52DAP/reference1.252430.072
57DAP/reference1.005750.779

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.071911
26DAP/20DAP1.092730.558
34DAP/26DAP1.06471
51DAP/34DAP0.975090.737
52DAP/51DAP0.984321
53DAP/52DAP1.046060.712
55DAP/53DAP0.967530.544
57DAP/55DAP0.988480.904
62DAP/57DAP1.148920.8
68DAP/62DAP0.767220.464
68DAP/14DAP0.65580.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.230370.034

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.928060.563
Mature Green Tomato/Ripe Tomato1.191960.632
Immature Eggplant/Mature Eggplant1.132810.13
Ripe Pepper/Ripe Tomato1.285161
Mature Eggplant/Ripe Tomato0.611910.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.927790.638
1-1-2/M821.43739
12-2/M821.02951
12-4/M821.011771
1-3/M821.253070.479
2-1-1/M821.03621
2-1/M820.905470.519
2-6/M820.968621
3-2/M821.055550.967
4-1-1/M821.064841
4-1/M821.470870.853
4-3-2/M821.00511
4-3/M820.990891
5-3/M821.047281
6-2/M821.141481
6-3/M821.027461
7-1/M821.152690.539
7-2/M821.035181
9-3-2/M821.125391

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.129420.531
IL7-5/WTpooled0.877071
IL7-3/WTpooled1.061671
IL12-4/WTpooled1.040010.839
IL1-4/WTpooled1.074791
WT/WTpooled1.028671

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.048131

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.074320.656
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.310221
DC3000/delta hrp 24h0.940260.543

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.906280.074
DC3000 delta B/DC3000 delta AB0.933350.217

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.938570.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.989961
Var 0h0.756960.933
Var 12h I row2-row11.163820.215
Var 12h NI row2-row10.958610.627
Var 36h I row2-row11.061991
Var 36h NI row2-row11.088870.482
Var 60h I row2-row11.044160.543
Var 60h NI row2-row11.020841
Time course 0hI-0hNI1.037920.833
Time course 12hI-12hNI1.025990.774
Time course 36hI-36hNI0.986220.632
Time course 60hI-60hNI0.987740.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.812550.485
transgenic ySAMdc/azygous control (breaker)0.972081
transgenic ySAMdc/azygous control (red)1.051081

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.848650.052

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.277580.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.770940.134