Expression of 1-1-3.1.19.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.276850.477
27DAP/17DAP1.053891
39DAP/27DAP1.652350.358
41DAP/39DAP0.800040.303
42DAP/41DAP0.782590.774
43DAP/42DAP1.081641
47DAP/43DAP0.71530.236
52DAP/47DAP1.476040.43
57DAP/52DAP1.03380.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.828220.111
17DAP/reference0.625210.007
27DAP/reference0.989710.711
39DAP/reference0.689050.012
41DAP/reference0.599670.008
42DAP/reference0.949070.233
43DAP/reference0.809610.022
47DAP/reference1.209420.524
52DAP/reference1.735480.041
57DAP/reference1.633330.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.756390.126
27DAP/17DAP1.008860.969
39DAP/27DAP1.074620.57
41DAP/39DAP1.320230.997
42DAP/41DAP1.451760.075
43DAP/42DAP1.327960.038
47DAP/43DAP1.110070.448
52DAP/47DAP0.546910.034
57DAP/52DAP1.136040.424
57DAP/7DAP1.089341

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.101440.576
17DAP/reference1.227350.016
27DAP/reference1.230440.16
39DAP/reference1.399560.03
41DAP/reference1.437390.018
42DAP/reference1.49810.013
43DAP/reference1.371720.018
47DAP/reference1.242720.182
52DAP/reference1.350530.02
57DAP/reference1.402680.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.68220.006
17DAP/reference0.560090.004
27DAP/reference1.059971
39DAP/reference1.186890.657
41DAP/reference1.201250.194
42DAP/reference1.100190.422
43DAP/reference0.81140.17
47DAP/reference0.804360.014
52DAP/reference0.965780.433
57DAP/reference0.6390.008

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.159730.397
17DAP/reference0.976830.647
27DAP/reference1.070170.26
39DAP/reference1.069580.169
41DAP/reference1.176260.104
42DAP/reference1.539230.039
43DAP/reference1.448460.084
47DAP/reference1.036741
52DAP/reference1.271010.363
57DAP/reference2.850910.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.879051
26DAP/20DAP1.20.24
34DAP/26DAP0.932620.682
51DAP/34DAP1.30290.058
52DAP/51DAP0.917091
53DAP/52DAP1.357530.041
55DAP/53DAP0.767740.023
57DAP/55DAP1.013190.986
62DAP/57DAP1.200230.515
68DAP/62DAP5.079580.037
68DAP/14DAP5.831440.02

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.878150.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.87335
Mature Green Tomato/Ripe Tomato0.69170.2
Immature Eggplant/Mature Eggplant1.47580.05
Ripe Pepper/Ripe Tomato0.46550.224
Mature Eggplant/Ripe Tomato0.418121

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.466190.742
1-1-2/M821.0598
12-2/M820.968210.955
12-4/M821.514931
1-3/M821.434490.479
2-1-1/M821.26646
2-1/M820.968251
2-6/M821.376610.329
3-2/M821.52793
4-1-1/M821.372171
4-1/M821.48019
4-3-2/M821.823270.508
4-3/M821.460111
5-3/M820.881250.49
6-2/M822.08301
6-3/M821.050650.971
7-1/M82N/AN/A
7-2/M821.051361
9-3-2/M823.17133

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.11710.46
IL7-5/WTpooled1.09348
IL7-3/WTpooled1.23795
IL12-4/WTpooled0.932281
IL1-4/WTpooled0.923580.394
WT/WTpooled0.79423

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.169740.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.856170.839
DC3000/delta hrp 6h1.207891
DC3000/delta hrp 12h1.040561
DC3000/delta hrp 24h0.957840.67

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.198430.042
DC3000 delta B/DC3000 delta AB1.236740.162

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.016621
Exp 36h1.353740.693
Exp 60h1.1560.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.984231
Var 0h0.611610.332
Var 12h I row2-row10.917030.467
Var 12h NI row2-row11.104631
Var 36h I row2-row11.14840.298
Var 36h NI row2-row11.09851
Var 60h I row2-row10.847380.285
Var 60h NI row2-row10.909770.572
Time course 0hI-0hNI1.121490.377
Time course 12hI-12hNI1.003271
Time course 36hI-36hNI1.240220.023
Time course 60hI-60hNI1.619450.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.036930.748
transgenic ySAMdc/azygous control (breaker)1.134391
transgenic ySAMdc/azygous control (red)0.967841

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.032890.372

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.003771

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.962481
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.164910.413