Expression of 1-1-3.1.19.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.27685 | 0.477 |
27DAP/17DAP | 1.05389 | 1 |
39DAP/27DAP | 1.65235 | 0.358 |
41DAP/39DAP | 0.80004 | 0.303 |
42DAP/41DAP | 0.78259 | 0.774 |
43DAP/42DAP | 1.08164 | 1 |
47DAP/43DAP | 0.7153 | 0.236 |
52DAP/47DAP | 1.47604 | 0.43 |
57DAP/52DAP | 1.0338 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82822 | 0.111 |
17DAP/reference | 0.62521 | 0.007 |
27DAP/reference | 0.98971 | 0.711 |
39DAP/reference | 0.68905 | 0.012 |
41DAP/reference | 0.59967 | 0.008 |
42DAP/reference | 0.94907 | 0.233 |
43DAP/reference | 0.80961 | 0.022 |
47DAP/reference | 1.20942 | 0.524 |
52DAP/reference | 1.73548 | 0.041 |
57DAP/reference | 1.63333 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.75639 | 0.126 |
27DAP/17DAP | 1.00886 | 0.969 |
39DAP/27DAP | 1.07462 | 0.57 |
41DAP/39DAP | 1.32023 | 0.997 |
42DAP/41DAP | 1.45176 | 0.075 |
43DAP/42DAP | 1.32796 | 0.038 |
47DAP/43DAP | 1.11007 | 0.448 |
52DAP/47DAP | 0.54691 | 0.034 |
57DAP/52DAP | 1.13604 | 0.424 |
57DAP/7DAP | 1.08934 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10144 | 0.576 |
17DAP/reference | 1.22735 | 0.016 |
27DAP/reference | 1.23044 | 0.16 |
39DAP/reference | 1.39956 | 0.03 |
41DAP/reference | 1.43739 | 0.018 |
42DAP/reference | 1.4981 | 0.013 |
43DAP/reference | 1.37172 | 0.018 |
47DAP/reference | 1.24272 | 0.182 |
52DAP/reference | 1.35053 | 0.02 |
57DAP/reference | 1.40268 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.6822 | 0.006 |
17DAP/reference | 0.56009 | 0.004 |
27DAP/reference | 1.05997 | 1 |
39DAP/reference | 1.18689 | 0.657 |
41DAP/reference | 1.20125 | 0.194 |
42DAP/reference | 1.10019 | 0.422 |
43DAP/reference | 0.8114 | 0.17 |
47DAP/reference | 0.80436 | 0.014 |
52DAP/reference | 0.96578 | 0.433 |
57DAP/reference | 0.639 | 0.008 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15973 | 0.397 |
17DAP/reference | 0.97683 | 0.647 |
27DAP/reference | 1.07017 | 0.26 |
39DAP/reference | 1.06958 | 0.169 |
41DAP/reference | 1.17626 | 0.104 |
42DAP/reference | 1.53923 | 0.039 |
43DAP/reference | 1.44846 | 0.084 |
47DAP/reference | 1.03674 | 1 |
52DAP/reference | 1.27101 | 0.363 |
57DAP/reference | 2.85091 | 0.008 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.87905 | 1 |
26DAP/20DAP | 1.2 | 0.24 |
34DAP/26DAP | 0.93262 | 0.682 |
51DAP/34DAP | 1.3029 | 0.058 |
52DAP/51DAP | 0.91709 | 1 |
53DAP/52DAP | 1.35753 | 0.041 |
55DAP/53DAP | 0.76774 | 0.023 |
57DAP/55DAP | 1.01319 | 0.986 |
62DAP/57DAP | 1.20023 | 0.515 |
68DAP/62DAP | 5.07958 | 0.037 |
68DAP/14DAP | 5.83144 | 0.02 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.87815 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.87335 | |
Mature Green Tomato/Ripe Tomato | 0.6917 | 0.2 |
Immature Eggplant/Mature Eggplant | 1.4758 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.4655 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.41812 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.46619 | 0.742 |
1-1-2/M82 | 1.0598 | |
12-2/M82 | 0.96821 | 0.955 |
12-4/M82 | 1.51493 | 1 |
1-3/M82 | 1.43449 | 0.479 |
2-1-1/M82 | 1.26646 | |
2-1/M82 | 0.96825 | 1 |
2-6/M82 | 1.37661 | 0.329 |
3-2/M82 | 1.52793 | |
4-1-1/M82 | 1.37217 | 1 |
4-1/M82 | 1.48019 | |
4-3-2/M82 | 1.82327 | 0.508 |
4-3/M82 | 1.46011 | 1 |
5-3/M82 | 0.88125 | 0.49 |
6-2/M82 | 2.08301 | |
6-3/M82 | 1.05065 | 0.971 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.05136 | 1 |
9-3-2/M82 | 3.17133 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.1171 | 0.46 |
IL7-5/WTpooled | 1.09348 | |
IL7-3/WTpooled | 1.23795 | |
IL12-4/WTpooled | 0.93228 | 1 |
IL1-4/WTpooled | 0.92358 | 0.394 |
WT/WTpooled | 0.79423 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16974 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.85617 | 0.839 |
DC3000/delta hrp 6h | 1.20789 | 1 |
DC3000/delta hrp 12h | 1.04056 | 1 |
DC3000/delta hrp 24h | 0.95784 | 0.67 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.19843 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.23674 | 0.162 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.01662 | 1 |
Exp 36h | 1.35374 | 0.693 |
Exp 60h | 1.156 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98423 | 1 |
Var 0h | 0.61161 | 0.332 |
Var 12h I row2-row1 | 0.91703 | 0.467 |
Var 12h NI row2-row1 | 1.10463 | 1 |
Var 36h I row2-row1 | 1.1484 | 0.298 |
Var 36h NI row2-row1 | 1.0985 | 1 |
Var 60h I row2-row1 | 0.84738 | 0.285 |
Var 60h NI row2-row1 | 0.90977 | 0.572 |
Time course 0hI-0hNI | 1.12149 | 0.377 |
Time course 12hI-12hNI | 1.00327 | 1 |
Time course 36hI-36hNI | 1.24022 | 0.023 |
Time course 60hI-60hNI | 1.61945 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.03693 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 1.13439 | 1 |
transgenic ySAMdc/azygous control (red) | 0.96784 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03289 | 0.372 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.00377 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.96248 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.16491 | 0.413 |
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