Expression of 1-1-3.1.19.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94454 | 0.683 |
27DAP/17DAP | 1.07734 | 0.864 |
39DAP/27DAP | 0.96006 | 0.682 |
41DAP/39DAP | 1.34674 | 0.357 |
42DAP/41DAP | 1.05947 | 1 |
43DAP/42DAP | 1.05332 | 1 |
47DAP/43DAP | 1.0552 | 0.889 |
52DAP/47DAP | 1.11919 | 0.851 |
57DAP/52DAP | 0.97606 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91665 | 0.149 |
17DAP/reference | 1.05706 | 0.294 |
27DAP/reference | 1.06703 | 0.648 |
39DAP/reference | 1.04702 | 0.679 |
41DAP/reference | 0.89009 | 0.267 |
42DAP/reference | 0.93279 | 0.019 |
43DAP/reference | 0.95401 | 0.346 |
47DAP/reference | 0.92474 | 0.127 |
52DAP/reference | 0.96411 | 0.427 |
57DAP/reference | 0.87298 | 0.176 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.34899 | 0.438 |
27DAP/17DAP | 1.09731 | 0.909 |
39DAP/27DAP | 0.80171 | 0.274 |
41DAP/39DAP | 0.9876 | 1 |
42DAP/41DAP | 0.95364 | 0.612 |
43DAP/42DAP | 0.9953 | 0.902 |
47DAP/43DAP | 1.01111 | 0.983 |
52DAP/47DAP | 0.86274 | 0.591 |
57DAP/52DAP | 1.09658 | 0.67 |
57DAP/7DAP | 1.21547 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89413 | 0.077 |
17DAP/reference | 0.80155 | 0.012 |
27DAP/reference | 0.7407 | 0.01 |
39DAP/reference | 0.8553 | 0.011 |
41DAP/reference | 0.8359 | 0.02 |
42DAP/reference | 0.85185 | 0.013 |
43DAP/reference | 0.78532 | 0.02 |
47DAP/reference | 0.91591 | 0.222 |
52DAP/reference | 0.89387 | 0.061 |
57DAP/reference | 0.91403 | 0.137 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0051 | 0.951 |
17DAP/reference | 0.83787 | 0.016 |
27DAP/reference | 0.90597 | 0.257 |
39DAP/reference | 0.91036 | 0.083 |
41DAP/reference | 1.21788 | 0.766 |
42DAP/reference | 0.84261 | 0.05 |
43DAP/reference | 1.02382 | 0.846 |
47DAP/reference | 0.95464 | 0.284 |
52DAP/reference | 0.94571 | 0.327 |
57DAP/reference | 1.11878 | 0.229 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79158 | 0.027 |
17DAP/reference | 0.97487 | 0.636 |
27DAP/reference | 0.70825 | 0.025 |
39DAP/reference | 0.66897 | 0.011 |
41DAP/reference | 0.79917 | 0.018 |
42DAP/reference | 0.72444 | 0.017 |
43DAP/reference | 0.74158 | 0.021 |
47DAP/reference | 0.94939 | 0.371 |
52DAP/reference | 0.72815 | 0.111 |
57DAP/reference | 0.83471 | 0.071 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.14384 | 0.966 |
26DAP/20DAP | 1.07137 | 1 |
34DAP/26DAP | 1.14956 | 1 |
51DAP/34DAP | 0.69122 | 0.174 |
52DAP/51DAP | 1.52217 | 0.335 |
53DAP/52DAP | 1.04782 | 1 |
55DAP/53DAP | 1.01175 | 1 |
57DAP/55DAP | 0.95918 | 0.633 |
62DAP/57DAP | 1.37588 | 0.678 |
68DAP/62DAP | 0.8136 | 0.579 |
68DAP/14DAP | 0.59472 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.13543 | 0.855 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.32807 | 0.106 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 1.48194 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.83054 | |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.14798 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.92779 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.24883 | 1 |
4-3-2/M82 | 0.73382 | 0.487 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.96269 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.71062 | 0.447 |
9-3-2/M82 | 0.90391 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.41176 | 0.243 |
IL2-6/WTpooled | 1.45793 | 0.427 |
IL7-5/WTpooled | 0.60575 | 1 |
IL7-3/WTpooled | 0.51042 | 0.294 |
IL12-4/WTpooled | 1.00379 | 1 |
IL1-4/WTpooled | 0.85305 | 0.699 |
WT/WTpooled | 1.06242 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.13971 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04112 | 0.921 |
DC3000/delta hrp 6h | 1.02717 | 0.95 |
DC3000/delta hrp 12h | 1.13257 | 1 |
DC3000/delta hrp 24h | 1.64833 | 0.467 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.04707 | 1 |
Exp 36h | 1.05707 | 1 |
Exp 60h | 1.38725 | 0.221 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96105 | 1 |
Var 0h | 1.06329 | 0.98 |
Var 12h I row2-row1 | 1.26359 | 0.263 |
Var 12h NI row2-row1 | 1.31285 | 1 |
Var 36h I row2-row1 | 1.1321 | 1 |
Var 36h NI row2-row1 | 0.52748 | 0.706 |
Var 60h I row2-row1 | 0.93598 | 0.285 |
Var 60h NI row2-row1 | 0.99269 | 1 |
Time course 0hI-0hNI | 1.2724 | 0.537 |
Time course 12hI-12hNI | 1.22767 | 0.682 |
Time course 36hI-36hNI | 1.41544 | 0.218 |
Time course 60hI-60hNI | 3.4876 | 0.042 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.8697 | 0.338 |
transgenic ySAMdc/azygous control (breaker) | 1.07282 | 1 |
transgenic ySAMdc/azygous control (red) | 1.03487 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00832 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.10433 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.03233 | 1 |
Manapal/WT (break) | 0.95211 | 1 |
Manapal/WT (red) | 0.74047 | 0.188 |
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