Expression of 1-1-3.1.19.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.944540.683
27DAP/17DAP1.077340.864
39DAP/27DAP0.960060.682
41DAP/39DAP1.346740.357
42DAP/41DAP1.059471
43DAP/42DAP1.053321
47DAP/43DAP1.05520.889
52DAP/47DAP1.119190.851
57DAP/52DAP0.976060.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.916650.149
17DAP/reference1.057060.294
27DAP/reference1.067030.648
39DAP/reference1.047020.679
41DAP/reference0.890090.267
42DAP/reference0.932790.019
43DAP/reference0.954010.346
47DAP/reference0.924740.127
52DAP/reference0.964110.427
57DAP/reference0.872980.176

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.348990.438
27DAP/17DAP1.097310.909
39DAP/27DAP0.801710.274
41DAP/39DAP0.98761
42DAP/41DAP0.953640.612
43DAP/42DAP0.99530.902
47DAP/43DAP1.011110.983
52DAP/47DAP0.862740.591
57DAP/52DAP1.096580.67
57DAP/7DAP1.215471

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.894130.077
17DAP/reference0.801550.012
27DAP/reference0.74070.01
39DAP/reference0.85530.011
41DAP/reference0.83590.02
42DAP/reference0.851850.013
43DAP/reference0.785320.02
47DAP/reference0.915910.222
52DAP/reference0.893870.061
57DAP/reference0.914030.137

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.00510.951
17DAP/reference0.837870.016
27DAP/reference0.905970.257
39DAP/reference0.910360.083
41DAP/reference1.217880.766
42DAP/reference0.842610.05
43DAP/reference1.023820.846
47DAP/reference0.954640.284
52DAP/reference0.945710.327
57DAP/reference1.118780.229

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.791580.027
17DAP/reference0.974870.636
27DAP/reference0.708250.025
39DAP/reference0.668970.011
41DAP/reference0.799170.018
42DAP/reference0.724440.017
43DAP/reference0.741580.021
47DAP/reference0.949390.371
52DAP/reference0.728150.111
57DAP/reference0.834710.071

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.143840.966
26DAP/20DAP1.071371
34DAP/26DAP1.149561
51DAP/34DAP0.691220.174
52DAP/51DAP1.522170.335
53DAP/52DAP1.047821
55DAP/53DAP1.011751
57DAP/55DAP0.959180.633
62DAP/57DAP1.375880.678
68DAP/62DAP0.81360.579
68DAP/14DAP0.594720.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.135430.855

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.328070.106
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato1.48194

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.83054
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.147981
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.927791
4-1-1/M82N/AN/A
4-1/M821.248831
4-3-2/M820.733820.487
4-3/M82N/AN/A
5-3/M820.962691
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M820.710620.447
9-3-2/M820.903911

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.411760.243
IL2-6/WTpooled1.457930.427
IL7-5/WTpooled0.605751
IL7-3/WTpooled0.510420.294
IL12-4/WTpooled1.003791
IL1-4/WTpooled0.853050.699
WT/WTpooled1.062421

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.139711

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.041120.921
DC3000/delta hrp 6h1.027170.95
DC3000/delta hrp 12h1.132571
DC3000/delta hrp 24h1.648330.467

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.047071
Exp 36h1.057071
Exp 60h1.387250.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.961051
Var 0h1.063290.98
Var 12h I row2-row11.263590.263
Var 12h NI row2-row11.312851
Var 36h I row2-row11.13211
Var 36h NI row2-row10.527480.706
Var 60h I row2-row10.935980.285
Var 60h NI row2-row10.992691
Time course 0hI-0hNI1.27240.537
Time course 12hI-12hNI1.227670.682
Time course 36hI-36hNI1.415440.218
Time course 60hI-60hNI3.48760.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.86970.338
transgenic ySAMdc/azygous control (breaker)1.072821
transgenic ySAMdc/azygous control (red)1.034870.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.008320.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.104330.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.032331
Manapal/WT (break)0.952111
Manapal/WT (red)0.740470.188