Expression of 1-1-3.1.2.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15554 | 0.681 |
27DAP/17DAP | 0.51033 | 0.039 |
39DAP/27DAP | 0.63169 | 0.278 |
41DAP/39DAP | 0.93469 | 0.73 |
42DAP/41DAP | 0.76939 | 0.774 |
43DAP/42DAP | 0.92236 | 0.865 |
47DAP/43DAP | 0.70554 | 0.225 |
52DAP/47DAP | 1.15291 | 0.945 |
57DAP/52DAP | 1.30643 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.66079 | 0.027 |
17DAP/reference | 0.61441 | 0.01 |
27DAP/reference | 0.66676 | 0.032 |
39DAP/reference | 0.65206 | 0.021 |
41DAP/reference | 0.52273 | 0.01 |
42DAP/reference | 0.70462 | 0.002 |
43DAP/reference | 0.81241 | 0.135 |
47DAP/reference | 0.74972 | 0.008 |
52DAP/reference | 0.72495 | 0.096 |
57DAP/reference | 0.98959 | 0.639 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99167 | 0.801 |
27DAP/17DAP | 0.8339 | 0.475 |
39DAP/27DAP | 0.47642 | 0.028 |
41DAP/39DAP | 1.19542 | 0.656 |
42DAP/41DAP | 0.88985 | 0.156 |
43DAP/42DAP | 0.69975 | 0.032 |
47DAP/43DAP | 0.90532 | 0.439 |
52DAP/47DAP | 0.97327 | 0.905 |
57DAP/52DAP | 1.01467 | 0.869 |
57DAP/7DAP | 0.47629 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87782 | 0.069 |
17DAP/reference | 0.83997 | 0.011 |
27DAP/reference | 0.78306 | 0.01 |
39DAP/reference | 0.88583 | 0.016 |
41DAP/reference | 0.75901 | 0.022 |
42DAP/reference | 0.8213 | 0.012 |
43DAP/reference | 0.84196 | 0.013 |
47DAP/reference | 0.6459 | 0.057 |
52DAP/reference | 0.79974 | 0.027 |
57DAP/reference | 0.83523 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.59134 | 0.01 |
17DAP/reference | 0.55436 | 0.008 |
27DAP/reference | 0.6242 | 0.014 |
39DAP/reference | 0.63054 | 0.041 |
41DAP/reference | 0.67304 | 0.012 |
42DAP/reference | 0.55359 | 0.012 |
43DAP/reference | 0.65345 | 0.03 |
47DAP/reference | 0.67074 | 0.011 |
52DAP/reference | 0.46071 | 0.003 |
57DAP/reference | 0.35319 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87117 | 0.05 |
17DAP/reference | 1.02953 | 0.977 |
27DAP/reference | 0.78793 | 0.025 |
39DAP/reference | 0.73611 | 0.014 |
41DAP/reference | 0.83329 | 0.03 |
42DAP/reference | 0.7873 | 0.071 |
43DAP/reference | 0.79034 | 0.028 |
47DAP/reference | 0.57908 | 0.006 |
52DAP/reference | 0.59503 | 0.066 |
57DAP/reference | 0.75142 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07749 | 0.966 |
26DAP/20DAP | 0.88813 | 0.512 |
34DAP/26DAP | 0.87004 | 0.561 |
51DAP/34DAP | 0.56561 | 0.063 |
52DAP/51DAP | 1.02886 | 0.836 |
53DAP/52DAP | 1.10934 | 0.738 |
55DAP/53DAP | 1.00261 | 0.864 |
57DAP/55DAP | 0.98234 | 0.909 |
62DAP/57DAP | 0.98081 | 0.994 |
68DAP/62DAP | 1.23617 | 0.589 |
68DAP/14DAP | 1.00142 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85873 | 0.211 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.08135 | 0.058 |
Mature Green Tomato/Ripe Tomato | 10.1195 | 0.015 |
Immature Eggplant/Mature Eggplant | 0.41108 | 0.062 |
Ripe Pepper/Ripe Tomato | 2.85705 | |
Mature Eggplant/Ripe Tomato | 16.6662 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.00752 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.15462 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.37855 | 0.277 |
IL2-6/WTpooled | 0.54129 | 0.348 |
IL7-5/WTpooled | 0.77861 | 1 |
IL7-3/WTpooled | 1.76333 | 1 |
IL12-4/WTpooled | 0.90349 | 1 |
IL1-4/WTpooled | 1.09379 | 1 |
WT/WTpooled | 1.07484 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03139 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95164 | 1 |
DC3000/delta hrp 6h | 1.18919 | 1 |
DC3000/delta hrp 12h | 0.87281 | 1 |
DC3000/delta hrp 24h | 0.93964 | 0.692 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.40647 | 0.025 |
DC3000 delta B/DC3000 delta AB | 0.33409 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93296 | 1 |
Exp 36h | 0.68267 | 0.456 |
Exp 60h | 0.52732 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98061 | 1 |
Var 0h | 1.05555 | 0.98 |
Var 12h I row2-row1 | 0.69556 | 0.363 |
Var 12h NI row2-row1 | 0.96589 | 0.906 |
Var 36h I row2-row1 | 0.76189 | 0.575 |
Var 36h NI row2-row1 | 1.08016 | 1 |
Var 60h I row2-row1 | 1.29414 | 0.543 |
Var 60h NI row2-row1 | 1.03966 | 1 |
Time course 0hI-0hNI | 0.94731 | 0.721 |
Time course 12hI-12hNI | 1.08692 | 0.703 |
Time course 36hI-36hNI | 0.75657 | 0.047 |
Time course 60hI-60hNI | 0.08049 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.11662 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 1.66668 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.26431 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.54905 | 0.085 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 3.0483 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 8.90811 | 0.087 |
Manapal/WT (break) | 6.45993 | 0.123 |
Manapal/WT (red) | 1.20707 | 1 |
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