Expression of 1-1-3.1.2.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.155540.681
27DAP/17DAP0.510330.039
39DAP/27DAP0.631690.278
41DAP/39DAP0.934690.73
42DAP/41DAP0.769390.774
43DAP/42DAP0.922360.865
47DAP/43DAP0.705540.225
52DAP/47DAP1.152910.945
57DAP/52DAP1.306430.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.660790.027
17DAP/reference0.614410.01
27DAP/reference0.666760.032
39DAP/reference0.652060.021
41DAP/reference0.522730.01
42DAP/reference0.704620.002
43DAP/reference0.812410.135
47DAP/reference0.749720.008
52DAP/reference0.724950.096
57DAP/reference0.989590.639

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.991670.801
27DAP/17DAP0.83390.475
39DAP/27DAP0.476420.028
41DAP/39DAP1.195420.656
42DAP/41DAP0.889850.156
43DAP/42DAP0.699750.032
47DAP/43DAP0.905320.439
52DAP/47DAP0.973270.905
57DAP/52DAP1.014670.869
57DAP/7DAP0.476291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.877820.069
17DAP/reference0.839970.011
27DAP/reference0.783060.01
39DAP/reference0.885830.016
41DAP/reference0.759010.022
42DAP/reference0.82130.012
43DAP/reference0.841960.013
47DAP/reference0.64590.057
52DAP/reference0.799740.027
57DAP/reference0.835230.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.591340.01
17DAP/reference0.554360.008
27DAP/reference0.62420.014
39DAP/reference0.630540.041
41DAP/reference0.673040.012
42DAP/reference0.553590.012
43DAP/reference0.653450.03
47DAP/reference0.670740.011
52DAP/reference0.460710.003
57DAP/reference0.353190.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.871170.05
17DAP/reference1.029530.977
27DAP/reference0.787930.025
39DAP/reference0.736110.014
41DAP/reference0.833290.03
42DAP/reference0.78730.071
43DAP/reference0.790340.028
47DAP/reference0.579080.006
52DAP/reference0.595030.066
57DAP/reference0.751420.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.077490.966
26DAP/20DAP0.888130.512
34DAP/26DAP0.870040.561
51DAP/34DAP0.565610.063
52DAP/51DAP1.028860.836
53DAP/52DAP1.109340.738
55DAP/53DAP1.002610.864
57DAP/55DAP0.982340.909
62DAP/57DAP0.980810.994
68DAP/62DAP1.236170.589
68DAP/14DAP1.001421

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.858730.211

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.081350.058
Mature Green Tomato/Ripe Tomato10.11950.015
Immature Eggplant/Mature Eggplant0.411080.062
Ripe Pepper/Ripe Tomato2.85705
Mature Eggplant/Ripe Tomato16.66620.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.00752
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.154621
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.378550.277
IL2-6/WTpooled0.541290.348
IL7-5/WTpooled0.778611
IL7-3/WTpooled1.763331
IL12-4/WTpooled0.903491
IL1-4/WTpooled1.093791
WT/WTpooled1.074841

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.031391

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.951641
DC3000/delta hrp 6h1.189191
DC3000/delta hrp 12h0.872811
DC3000/delta hrp 24h0.939640.692

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.406470.025
DC3000 delta B/DC3000 delta AB0.334090.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.932961
Exp 36h0.682670.456
Exp 60h0.527320.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.980611
Var 0h1.055550.98
Var 12h I row2-row10.695560.363
Var 12h NI row2-row10.965890.906
Var 36h I row2-row10.761890.575
Var 36h NI row2-row11.080161
Var 60h I row2-row11.294140.543
Var 60h NI row2-row11.039661
Time course 0hI-0hNI0.947310.721
Time course 12hI-12hNI1.086920.703
Time course 36hI-36hNI0.756570.047
Time course 60hI-60hNI0.080490.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.116620.748
transgenic ySAMdc/azygous control (breaker)1.666680.178
transgenic ySAMdc/azygous control (red)1.264310.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.549050.085

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt3.04830.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)8.908110.087
Manapal/WT (break)6.459930.123
Manapal/WT (red)1.207071