Expression of 1-1-3.1.20.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.956590.743
27DAP/17DAP1.025521
39DAP/27DAP1.097010.946
41DAP/39DAP1.094950.929
42DAP/41DAP0.79991
43DAP/42DAP0.992160.925
47DAP/43DAP0.909030.71
52DAP/47DAP1.259110.662
57DAP/52DAP0.764070.85

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.157310.928
17DAP/reference0.867360.24
27DAP/reference0.946080.623
39DAP/reference0.79825
41DAP/reference0.856190.085
42DAP/reference0.948690.337
43DAP/reference0.962210.611
47DAP/reference1.035560.937
52DAP/reference1.363070.062
57DAP/reference0.9950.767

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAPN/AN/A
27DAP/17DAP0.96507
39DAP/27DAP0.972330.821
41DAP/39DAP0.931410.696
42DAP/41DAP0.997010.929
43DAP/42DAP1.000031
47DAP/43DAP0.986250.961
52DAP/47DAP0.86282
57DAP/52DAP0.98478
57DAP/7DAP0.93871

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.101230.274
17DAP/reference1.255730.026
27DAP/referenceN/AN/A
39DAP/reference1.168620.314
41DAP/reference1.124690.117
42DAP/reference1.098110.132
43DAP/reference1.019180.974
47DAP/reference1.299140.525
52DAP/reference1.363810.266
57DAP/reference1.45080.183

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.95060.669
17DAP/reference0.73807
27DAP/reference1.055150.847
39DAP/reference1.142570.207
41DAP/reference0.916270.291
42DAP/reference1.060060.794
43DAP/reference1.156730.611
47DAP/reference0.946040.5
52DAP/reference1.08283
57DAP/reference1.172710.062

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.033390.918
17DAP/reference1.268610.294
27DAP/reference1.640810.015
39DAP/reference1.533610.019
41DAP/reference1.24408
42DAP/reference1.3940.012
43DAP/reference1.213740.111
47DAP/reference1.44392
52DAP/reference1.076360.735
57DAP/reference1.405010.218

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.886510.981
26DAP/20DAP2.242720.097
34DAP/26DAP1.591311
51DAP/34DAP1.136690.241
52DAP/51DAPN/AN/A
53DAP/52DAP0.73112
55DAP/53DAP0.93723
57DAP/55DAP0.913590.76
62DAP/57DAP1.241781
68DAP/62DAP2.120230.047
68DAP/14DAP3.32720.017

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.06040.326

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.778990.23
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant0.790730.071
Ripe Pepper/Ripe Tomato1.230541
Mature Eggplant/Ripe Tomato1.023241

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.914850.883
1-1-2/M820.99127
12-2/M821.029821
12-4/M821.035171
1-3/M820.989851
2-1-1/M821.126790.764
2-1/M821.00828
2-6/M821.00121
3-2/M821.00578
4-1-1/M820.990531
4-1/M820.95795
4-3-2/M820.85581
4-3/M820.987091
5-3/M820.983951
6-2/M821.063861
6-3/M820.971551
7-1/M82N/AN/A
7-2/M820.912770.527
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.848840.321
IL2-6/WTpooled1.079340.395
IL7-5/WTpooled0.999321
IL7-3/WTpooled0.959681
IL12-4/WTpooled1.108270.557
IL1-4/WTpooled0.989931
WT/WTpooled1.049411

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.992620.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.044210.921
DC3000/delta hrp 6h1.007871
DC3000/delta hrp 12h1.065931
DC3000/delta hrp 24h1.03510.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.271451
Exp 36h1.193681
Exp 60h0.985110.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002461
Var 0hN/AN/A
Var 12h I row2-row11.101790.58
Var 12h NI row2-row11.106060.649
Var 36h I row2-row10.991121
Var 36h NI row2-row11.482491
Var 60h I row2-row11.039251
Var 60h NI row2-row10.935661
Time course 0hI-0hNI0.790740.185
Time course 12hI-12hNI1.111231
Time course 36hI-36hNI1.405210.533
Time course 60hI-60hNI0.759460.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.969280.529
transgenic ySAMdc/azygous control (breaker)1.792010.178
transgenic ySAMdc/azygous control (red)1.086950.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.97920.227

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.993291

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.040770.086
Manapal/WT (break)2.24490.14
Manapal/WT (red)1.869380.164