Expression of 1-1-3.1.20.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95659 | 0.743 |
27DAP/17DAP | 1.02552 | 1 |
39DAP/27DAP | 1.09701 | 0.946 |
41DAP/39DAP | 1.09495 | 0.929 |
42DAP/41DAP | 0.7999 | 1 |
43DAP/42DAP | 0.99216 | 0.925 |
47DAP/43DAP | 0.90903 | 0.71 |
52DAP/47DAP | 1.25911 | 0.662 |
57DAP/52DAP | 0.76407 | 0.85 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15731 | 0.928 |
17DAP/reference | 0.86736 | 0.24 |
27DAP/reference | 0.94608 | 0.623 |
39DAP/reference | 0.79825 | |
41DAP/reference | 0.85619 | 0.085 |
42DAP/reference | 0.94869 | 0.337 |
43DAP/reference | 0.96221 | 0.611 |
47DAP/reference | 1.03556 | 0.937 |
52DAP/reference | 1.36307 | 0.062 |
57DAP/reference | 0.995 | 0.767 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | N/A | N/A |
27DAP/17DAP | 0.96507 | |
39DAP/27DAP | 0.97233 | 0.821 |
41DAP/39DAP | 0.93141 | 0.696 |
42DAP/41DAP | 0.99701 | 0.929 |
43DAP/42DAP | 1.00003 | 1 |
47DAP/43DAP | 0.98625 | 0.961 |
52DAP/47DAP | 0.86282 | |
57DAP/52DAP | 0.98478 | |
57DAP/7DAP | 0.9387 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10123 | 0.274 |
17DAP/reference | 1.25573 | 0.026 |
27DAP/reference | N/A | N/A |
39DAP/reference | 1.16862 | 0.314 |
41DAP/reference | 1.12469 | 0.117 |
42DAP/reference | 1.09811 | 0.132 |
43DAP/reference | 1.01918 | 0.974 |
47DAP/reference | 1.29914 | 0.525 |
52DAP/reference | 1.36381 | 0.266 |
57DAP/reference | 1.4508 | 0.183 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9506 | 0.669 |
17DAP/reference | 0.73807 | |
27DAP/reference | 1.05515 | 0.847 |
39DAP/reference | 1.14257 | 0.207 |
41DAP/reference | 0.91627 | 0.291 |
42DAP/reference | 1.06006 | 0.794 |
43DAP/reference | 1.15673 | 0.611 |
47DAP/reference | 0.94604 | 0.5 |
52DAP/reference | 1.08283 | |
57DAP/reference | 1.17271 | 0.062 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03339 | 0.918 |
17DAP/reference | 1.26861 | 0.294 |
27DAP/reference | 1.64081 | 0.015 |
39DAP/reference | 1.53361 | 0.019 |
41DAP/reference | 1.24408 | |
42DAP/reference | 1.394 | 0.012 |
43DAP/reference | 1.21374 | 0.111 |
47DAP/reference | 1.44392 | |
52DAP/reference | 1.07636 | 0.735 |
57DAP/reference | 1.40501 | 0.218 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.88651 | 0.981 |
26DAP/20DAP | 2.24272 | 0.097 |
34DAP/26DAP | 1.59131 | 1 |
51DAP/34DAP | 1.13669 | 0.241 |
52DAP/51DAP | N/A | N/A |
53DAP/52DAP | 0.73112 | |
55DAP/53DAP | 0.93723 | |
57DAP/55DAP | 0.91359 | 0.76 |
62DAP/57DAP | 1.24178 | 1 |
68DAP/62DAP | 2.12023 | 0.047 |
68DAP/14DAP | 3.3272 | 0.017 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0604 | 0.326 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.77899 | 0.23 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 0.79073 | 0.071 |
Ripe Pepper/Ripe Tomato | 1.23054 | 1 |
Mature Eggplant/Ripe Tomato | 1.02324 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.91485 | 0.883 |
1-1-2/M82 | 0.99127 | |
12-2/M82 | 1.02982 | 1 |
12-4/M82 | 1.03517 | 1 |
1-3/M82 | 0.98985 | 1 |
2-1-1/M82 | 1.12679 | 0.764 |
2-1/M82 | 1.00828 | |
2-6/M82 | 1.0012 | 1 |
3-2/M82 | 1.00578 | |
4-1-1/M82 | 0.99053 | 1 |
4-1/M82 | 0.95795 | |
4-3-2/M82 | 0.85581 | |
4-3/M82 | 0.98709 | 1 |
5-3/M82 | 0.98395 | 1 |
6-2/M82 | 1.06386 | 1 |
6-3/M82 | 0.97155 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.91277 | 0.527 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.84884 | 0.321 |
IL2-6/WTpooled | 1.07934 | 0.395 |
IL7-5/WTpooled | 0.99932 | 1 |
IL7-3/WTpooled | 0.95968 | 1 |
IL12-4/WTpooled | 1.10827 | 0.557 |
IL1-4/WTpooled | 0.98993 | 1 |
WT/WTpooled | 1.04941 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.99262 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04421 | 0.921 |
DC3000/delta hrp 6h | 1.00787 | 1 |
DC3000/delta hrp 12h | 1.06593 | 1 |
DC3000/delta hrp 24h | 1.0351 | 0.797 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.27145 | 1 |
Exp 36h | 1.19368 | 1 |
Exp 60h | 0.98511 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00246 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.10179 | 0.58 |
Var 12h NI row2-row1 | 1.10606 | 0.649 |
Var 36h I row2-row1 | 0.99112 | 1 |
Var 36h NI row2-row1 | 1.48249 | 1 |
Var 60h I row2-row1 | 1.03925 | 1 |
Var 60h NI row2-row1 | 0.93566 | 1 |
Time course 0hI-0hNI | 0.79074 | 0.185 |
Time course 12hI-12hNI | 1.11123 | 1 |
Time course 36hI-36hNI | 1.40521 | 0.533 |
Time course 60hI-60hNI | 0.75946 | 0.081 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96928 | 0.529 |
transgenic ySAMdc/azygous control (breaker) | 1.79201 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.08695 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.9792 | 0.227 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99329 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.04077 | 0.086 |
Manapal/WT (break) | 2.2449 | 0.14 |
Manapal/WT (red) | 1.86938 | 0.164 |
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