Expression of 1-1-3.1.20.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.999350.205
27DAP/17DAP1.455550.798
39DAP/27DAP1.3960.489
41DAP/39DAP0.662960.111
42DAP/41DAP0.843811
43DAP/42DAP1.192690.869
47DAP/43DAP0.720420.242
52DAP/47DAP0.938570.711
57DAP/52DAP0.871470.879

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.847380.043
17DAP/reference0.8430.016
27DAP/reference0.938250.249
39DAP/reference1.064640.393
41DAP/reference0.977370.667
42DAP/reference0.943540.069
43DAP/reference1.067770.495
47DAP/reference1.020461
52DAP/reference1.040310.8
57DAP/reference1.112150.159

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.466260.515
27DAP/17DAP1.030980.887
39DAP/27DAP1.514620.121
41DAP/39DAP0.936160.875
42DAP/41DAP0.962240.712
43DAP/42DAP1.375840.324
47DAP/43DAP1.006610.954
52DAP/47DAP1.284910.467
57DAP/52DAP0.861440.311
57DAP/7DAP1.521761

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.994720.758
17DAP/reference0.903850.035
27DAP/reference0.913410.125
39DAP/reference0.801740.015
41DAP/reference0.923560.098
42DAP/reference0.934170.16
43DAP/reference0.862930.033
47DAP/reference0.973030.671
52DAP/reference0.957330.163
57DAP/reference0.972920.396

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.882070.268
17DAP/reference0.78260.028
27DAP/reference0.872580.16
39DAP/reference0.887790.156
41DAP/reference0.938640.226
42DAP/reference0.934780.261
43DAP/reference0.913370.307
47DAP/reference0.958420.214
52DAP/reference1.031830.988
57DAP/reference0.881220.135

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.932060.391
17DAP/reference0.937760.417
27DAP/reference0.894390.108
39DAP/reference0.869650.046
41DAP/reference0.929020.148
42DAP/reference0.875740.087
43DAP/reference0.980210.59
47DAP/reference0.981030.525
52DAP/reference0.908370.334
57DAP/reference1.035350.867

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.000691
26DAP/20DAP1.253390.689
34DAP/26DAP1.299320.819
51DAP/34DAP1.383450.051
52DAP/51DAP0.681841
53DAP/52DAP1.084650.738
55DAP/53DAP0.694750.034
57DAP/55DAP1.594740.61
62DAP/57DAP1.017921
68DAP/62DAP1.496630.1
68DAP/14DAP1.850380.027

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.693960.054

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.350490.073
Mature Green Tomato/Ripe Tomato3.460160.016
Immature Eggplant/Mature Eggplant1.498670.05
Ripe Pepper/Ripe Tomato4.792850.256
Mature Eggplant/Ripe Tomato0.695170.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.170610.591
1-1-2/M821.019061
12-2/M821.018451
12-4/M820.999861
1-3/M821.025951
2-1-1/M821.197530.457
2-1/M821.084561
2-6/M820.958261
3-2/M821.04671
4-1-1/M821.095571
4-1/M821.26622
4-3-2/M820.94928
4-3/M821.441021
5-3/M820.917281
6-2/M820.880231
6-3/M820.974071
7-1/M82N/AN/A
7-2/M821.098491
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.84731
IL2-6/WTpooled1.031540.584
IL7-5/WTpooled1.3052
IL7-3/WTpooled1.135021
IL12-4/WTpooled0.899830.581
IL1-4/WTpooled0.928670.834
WT/WTpooled0.970991

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.09527

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.940121
DC3000/delta hrp 6h0.835140.95
DC3000/delta hrp 12h0.986121
DC3000/delta hrp 24h1.027710.71

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.5298

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.981671
Exp 36h1.064581
Exp 60h1.369470.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.910971
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row11.36997
Var 36h I row2-row10.93733
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row10.979821
Var 60h NI row2-row11.77403
Time course 0hI-0hNI1.686230.662
Time course 12hI-12hNI0.950160.855
Time course 36hI-36hNI0.51514
Time course 60hI-60hNI1.689850.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.982620.614
transgenic ySAMdc/azygous control (breaker)0.922160.49
transgenic ySAMdc/azygous control (red)1.134950.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.022620.448

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.955360.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.884030.172
Manapal/WT (break)0.686750.299
Manapal/WT (red)0.533620.181