Expression of 1-1-3.1.3.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.25568 | 0.656 |
27DAP/17DAP | 0.8757 | 0.69 |
39DAP/27DAP | 1.14334 | 0.938 |
41DAP/39DAP | 0.86565 | 0.47 |
42DAP/41DAP | 0.79222 | 0.774 |
43DAP/42DAP | 1.07913 | 1 |
47DAP/43DAP | 0.95954 | 0.828 |
52DAP/47DAP | 0.75643 | 0.382 |
57DAP/52DAP | 1.09218 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95896 | 0.476 |
17DAP/reference | 0.92847 | 0.224 |
27DAP/reference | 1.10641 | 0.782 |
39DAP/reference | 0.70748 | 0.221 |
41DAP/reference | 1.10684 | 0.759 |
42DAP/reference | 0.89554 | 0.091 |
43DAP/reference | 0.76335 | 0.054 |
47DAP/reference | 0.93284 | 0.3 |
52DAP/reference | 0.78893 | 0.018 |
57DAP/reference | 1.04795 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89278 | 0.299 |
27DAP/17DAP | 1.04974 | 0.805 |
39DAP/27DAP | 0.97224 | 0.721 |
41DAP/39DAP | 0.98159 | 0.98 |
42DAP/41DAP | 0.9963 | 0.869 |
43DAP/42DAP | 0.89667 | 0.235 |
47DAP/43DAP | 0.94625 | 0.588 |
52DAP/47DAP | 1.03995 | 0.868 |
57DAP/52DAP | 0.83367 | 0.294 |
57DAP/7DAP | 1.14135 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28258 | 0.069 |
17DAP/reference | 1.15916 | 0.18 |
27DAP/reference | 0.9673 | 0.43 |
39DAP/reference | 0.98853 | 0.552 |
41DAP/reference | 1.06916 | 0.977 |
42DAP/reference | 1.17264 | 0.076 |
43DAP/reference | 1.01592 | 1 |
47DAP/reference | 1.13321 | 0.885 |
52DAP/reference | 1.41197 | 0.092 |
57DAP/reference | 1.28521 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87689 | 0.11 |
17DAP/reference | 0.89679 | 0.059 |
27DAP/reference | 0.90388 | 0.093 |
39DAP/reference | 0.87307 | 0.042 |
41DAP/reference | 0.82676 | 0.01 |
42DAP/reference | 0.86282 | 0.032 |
43DAP/reference | 0.84976 | 0.117 |
47DAP/reference | 0.91307 | 0.123 |
52DAP/reference | 0.8674 | 0.008 |
57DAP/reference | 0.75463 | 0.002 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02025 | 0.963 |
17DAP/reference | 1.08918 | 0.545 |
27DAP/reference | 1.19876 | 0.207 |
39DAP/reference | 1.03926 | 0.773 |
41DAP/reference | 1.16705 | 0.086 |
42DAP/reference | 0.90868 | 0.172 |
43DAP/reference | 0.92768 | 0.256 |
47DAP/reference | 0.85368 | 0.007 |
52DAP/reference | 0.84929 | 0.25 |
57DAP/reference | 1.20673 | 0.126 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94454 | 1 |
26DAP/20DAP | 1.07841 | 0.834 |
34DAP/26DAP | 1.1186 | 0.819 |
51DAP/34DAP | 1.18825 | 0.339 |
52DAP/51DAP | 0.75419 | 0.151 |
53DAP/52DAP | 0.90325 | 0.663 |
55DAP/53DAP | 0.95713 | 0.698 |
57DAP/55DAP | 0.97843 | 0.904 |
62DAP/57DAP | 1.35684 | 0.393 |
68DAP/62DAP | 1.42635 | 0.247 |
68DAP/14DAP | 1.25344 | 0.099 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04343 | 0.954 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.51221 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.67485 | 0.086 |
Immature Eggplant/Mature Eggplant | 0.70613 | 0.063 |
Ripe Pepper/Ripe Tomato | 0.86306 | 1 |
Mature Eggplant/Ripe Tomato | 0.98905 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04687 | 1 |
1-1-2/M82 | 0.96561 | 1 |
12-2/M82 | 1.19856 | 1 |
12-4/M82 | 1.00885 | 1 |
1-3/M82 | 1.04308 | |
2-1-1/M82 | 1.08572 | |
2-1/M82 | 1.04745 | |
2-6/M82 | 1.08318 | 1 |
3-2/M82 | 0.913 | |
4-1-1/M82 | 0.87969 | 1 |
4-1/M82 | 1.1058 | |
4-3-2/M82 | 0.959 | 1 |
4-3/M82 | 0.85983 | 0.72 |
5-3/M82 | 1.12526 | 0.572 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.12352 | |
7-1/M82 | 1.10255 | 0.598 |
7-2/M82 | 1.09999 | 1 |
9-3-2/M82 | 1.20624 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12411 | 0.493 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.19829 | 1 |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.15222 | 0.417 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.09199 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97352 | 1 |
DC3000/delta hrp 6h | 0.96661 | 0.95 |
DC3000/delta hrp 12h | 1.11989 | 1 |
DC3000/delta hrp 24h | 0.98519 | 0.957 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.73856 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.80908 | 0.069 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96222 | 0.328 |
Exp 36h | 0.84582 | 0.623 |
Exp 60h | 0.69321 | 0.32 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96453 | 1 |
Var 0h | 1.02237 | 1 |
Var 12h I row2-row1 | 0.89876 | 0.627 |
Var 12h NI row2-row1 | 0.96212 | 0.906 |
Var 36h I row2-row1 | 0.9666 | 1 |
Var 36h NI row2-row1 | 1.13551 | 1 |
Var 60h I row2-row1 | 1.59066 | 0.562 |
Var 60h NI row2-row1 | 0.91269 | 1 |
Time course 0hI-0hNI | 0.93875 | 0.649 |
Time course 12hI-12hNI | 0.94999 | 0.628 |
Time course 36hI-36hNI | 0.76568 | 0.024 |
Time course 60hI-60hNI | 0.23084 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99471 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.35601 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.03718 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.89847 | 0.191 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.20086 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.1522 | 0.086 |
Manapal/WT (break) | 1.32085 | 0.183 |
Manapal/WT (red) | 1.42233 | 0.142 |
|
|