Expression of 1-1-3.1.3.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.255680.656
27DAP/17DAP0.87570.69
39DAP/27DAP1.143340.938
41DAP/39DAP0.865650.47
42DAP/41DAP0.792220.774
43DAP/42DAP1.079131
47DAP/43DAP0.959540.828
52DAP/47DAP0.756430.382
57DAP/52DAP1.092180.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.958960.476
17DAP/reference0.928470.224
27DAP/reference1.106410.782
39DAP/reference0.707480.221
41DAP/reference1.106840.759
42DAP/reference0.895540.091
43DAP/reference0.763350.054
47DAP/reference0.932840.3
52DAP/reference0.788930.018
57DAP/reference1.04795

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.892780.299
27DAP/17DAP1.049740.805
39DAP/27DAP0.972240.721
41DAP/39DAP0.981590.98
42DAP/41DAP0.99630.869
43DAP/42DAP0.896670.235
47DAP/43DAP0.946250.588
52DAP/47DAP1.039950.868
57DAP/52DAP0.833670.294
57DAP/7DAP1.14135

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.282580.069
17DAP/reference1.159160.18
27DAP/reference0.96730.43
39DAP/reference0.988530.552
41DAP/reference1.069160.977
42DAP/reference1.172640.076
43DAP/reference1.015921
47DAP/reference1.133210.885
52DAP/reference1.411970.092
57DAP/reference1.285210.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.876890.11
17DAP/reference0.896790.059
27DAP/reference0.903880.093
39DAP/reference0.873070.042
41DAP/reference0.826760.01
42DAP/reference0.862820.032
43DAP/reference0.849760.117
47DAP/reference0.913070.123
52DAP/reference0.86740.008
57DAP/reference0.754630.002

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.020250.963
17DAP/reference1.089180.545
27DAP/reference1.198760.207
39DAP/reference1.039260.773
41DAP/reference1.167050.086
42DAP/reference0.908680.172
43DAP/reference0.927680.256
47DAP/reference0.853680.007
52DAP/reference0.849290.25
57DAP/reference1.206730.126

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.944541
26DAP/20DAP1.078410.834
34DAP/26DAP1.11860.819
51DAP/34DAP1.188250.339
52DAP/51DAP0.754190.151
53DAP/52DAP0.903250.663
55DAP/53DAP0.957130.698
57DAP/55DAP0.978430.904
62DAP/57DAP1.356840.393
68DAP/62DAP1.426350.247
68DAP/14DAP1.253440.099

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.043430.954

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.512210.058
Mature Green Tomato/Ripe Tomato1.674850.086
Immature Eggplant/Mature Eggplant0.706130.063
Ripe Pepper/Ripe Tomato0.863061
Mature Eggplant/Ripe Tomato0.989051

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.046871
1-1-2/M820.965611
12-2/M821.198561
12-4/M821.008851
1-3/M821.04308
2-1-1/M821.08572
2-1/M821.04745
2-6/M821.083181
3-2/M820.913
4-1-1/M820.879691
4-1/M821.1058
4-3-2/M820.9591
4-3/M820.859830.72
5-3/M821.125260.572
6-2/M82N/AN/A
6-3/M821.12352
7-1/M821.102550.598
7-2/M821.099991
9-3-2/M821.20624

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.124110.493
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.198291
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.152220.417
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.091991

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.973521
DC3000/delta hrp 6h0.966610.95
DC3000/delta hrp 12h1.119891
DC3000/delta hrp 24h0.985190.957

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.738560.024
DC3000 delta B/DC3000 delta AB0.809080.069

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.962220.328
Exp 36h0.845820.623
Exp 60h0.693210.32

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.964531
Var 0h1.022371
Var 12h I row2-row10.898760.627
Var 12h NI row2-row10.962120.906
Var 36h I row2-row10.96661
Var 36h NI row2-row11.135511
Var 60h I row2-row11.590660.562
Var 60h NI row2-row10.912691
Time course 0hI-0hNI0.938750.649
Time course 12hI-12hNI0.949990.628
Time course 36hI-36hNI0.765680.024
Time course 60hI-60hNI0.230840.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.994710.862
transgenic ySAMdc/azygous control (breaker)1.356010.248
transgenic ySAMdc/azygous control (red)1.037180.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.898470.191

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.200860.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.15220.086
Manapal/WT (break)1.320850.183
Manapal/WT (red)1.422330.142