Expression of 1-1-3.1.6.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91033 | 0.496 |
27DAP/17DAP | 0.99783 | 0.959 |
39DAP/27DAP | 1.25106 | 0.565 |
41DAP/39DAP | 1.09081 | 0.387 |
42DAP/41DAP | 1.16052 | 0.825 |
43DAP/42DAP | 1.12821 | 0.929 |
47DAP/43DAP | 0.86435 | 0.533 |
52DAP/47DAP | 1.20989 | 0.856 |
57DAP/52DAP | 0.92268 | 0.759 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01137 | 1 |
17DAP/reference | 0.97191 | 0.503 |
27DAP/reference | 0.95621 | 0.286 |
39DAP/reference | 0.96583 | 0.412 |
41DAP/reference | 0.97584 | 0.667 |
42DAP/reference | 0.9053 | 0.004 |
43DAP/reference | 0.98662 | 0.763 |
47DAP/reference | 0.87353 | 0.006 |
52DAP/reference | 0.86114 | 0.022 |
57DAP/reference | 0.85857 | 0.023 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19339 | 0.271 |
27DAP/17DAP | 0.99959 | 0.969 |
39DAP/27DAP | 0.9822 | 0.881 |
41DAP/39DAP | 0.97277 | 0.959 |
42DAP/41DAP | 0.99533 | 0.872 |
43DAP/42DAP | 1.26299 | 0.072 |
47DAP/43DAP | 1.06552 | 0.735 |
52DAP/47DAP | 1.00687 | 1 |
57DAP/52DAP | 0.89913 | 0.519 |
57DAP/7DAP | 1.1493 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04858 | 0.98 |
17DAP/reference | 0.84097 | 0.108 |
27DAP/reference | 1.18506 | 1 |
39DAP/reference | 1.12936 | 0.57 |
41DAP/reference | 0.8648 | 0.056 |
42DAP/reference | 0.9458 | 0.371 |
43DAP/reference | 0.9177 | 0.175 |
47DAP/reference | 0.90031 | 0.383 |
52DAP/reference | 1.03189 | 1 |
57DAP/reference | 1.0198 | 0.648 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0049 | 0.869 |
17DAP/reference | 1.10225 | 0.117 |
27DAP/reference | 0.96858 | 0.393 |
39DAP/reference | 0.95428 | 0.289 |
41DAP/reference | 0.97676 | 0.472 |
42DAP/reference | 0.85446 | 0.039 |
43DAP/reference | 1.04363 | 0.617 |
47DAP/reference | 0.89896 | 0.016 |
52DAP/reference | 0.9846 | 0.5 |
57DAP/reference | 1.04813 | 0.423 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8332 | 0.335 |
17DAP/reference | 0.97156 | 0.696 |
27DAP/reference | 1.20241 | |
39DAP/reference | 1.15465 | 0.483 |
41DAP/reference | 1.01403 | 1 |
42DAP/reference | 0.76141 | 0.011 |
43DAP/reference | 1.26083 | 0.355 |
47DAP/reference | 0.96297 | 0.383 |
52DAP/reference | 1.42685 | 0.357 |
57DAP/reference | 0.71386 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94059 | 0.981 |
26DAP/20DAP | 0.84241 | 0.512 |
34DAP/26DAP | 1.09815 | 1 |
51DAP/34DAP | 1.14426 | 0.511 |
52DAP/51DAP | 1.02309 | 0.915 |
53DAP/52DAP | 0.92844 | 0.723 |
55DAP/53DAP | 1.13774 | 0.218 |
57DAP/55DAP | 0.99235 | 0.904 |
62DAP/57DAP | 1.03941 | 0.678 |
68DAP/62DAP | 0.93798 | 0.747 |
68DAP/14DAP | 0.9515 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.6658 | 0.036 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.64061 | 0.153 |
Mature Green Tomato/Ripe Tomato | 1.84534 | 0.058 |
Immature Eggplant/Mature Eggplant | 1.35008 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.36904 | 1 |
Mature Eggplant/Ripe Tomato | 3.29207 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.2259 | 0.526 |
1-1-2/M82 | 0.79893 | |
12-2/M82 | 1.13216 | |
12-4/M82 | 0.98041 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.16526 | 0.695 |
3-2/M82 | 0.72014 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.61597 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.06805 | |
5-3/M82 | 0.93267 | 0.447 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.79446 | |
7-2/M82 | 1.01968 | 1 |
9-3-2/M82 | 1.60458 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.94074 | 1 |
IL7-5/WTpooled | 1.42909 | |
IL7-3/WTpooled | 1.02584 | 1 |
IL12-4/WTpooled | 1.18235 | 0.624 |
IL1-4/WTpooled | 1.01839 | |
WT/WTpooled | 0.9771 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.8419 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.90534 | 0.868 |
DC3000/delta hrp 6h | 1.04183 | 1 |
DC3000/delta hrp 12h | 1.0747 | 1 |
DC3000/delta hrp 24h | 0.7857 | 0.1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.03136 | |
DC3000 delta B/DC3000 delta AB | 0.73852 | 0.142 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.74088 | 1 |
Exp 36h | 1.20104 | 0.693 |
Exp 60h | 1.11277 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98668 | 1 |
Var 0h | 0.66268 | 0.933 |
Var 12h I row2-row1 | 0.90837 | 0.338 |
Var 12h NI row2-row1 | 1.00891 | 1 |
Var 36h I row2-row1 | 0.92655 | 0.805 |
Var 36h NI row2-row1 | 1.30367 | 0.482 |
Var 60h I row2-row1 | 0.94016 | 0.293 |
Var 60h NI row2-row1 | 1.20147 | 0.904 |
Time course 0hI-0hNI | 0.95983 | 0.799 |
Time course 12hI-12hNI | 0.98229 | 0.897 |
Time course 36hI-36hNI | 0.82703 | 0.036 |
Time course 60hI-60hNI | 0.38771 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.06427 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 1.3821 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.21626 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08873 | 0.034 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.03682 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92575 | 1 |
Manapal/WT (break) | 1.17972 | 1 |
Manapal/WT (red) | 1.5722 | 0.413 |
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