Expression of 1-1-3.1.6.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13723 | 0.452 |
27DAP/17DAP | 1.16228 | 0.833 |
39DAP/27DAP | 1.206 | 0.507 |
41DAP/39DAP | 0.93159 | 0.63 |
42DAP/41DAP | 1.20267 | 0.844 |
43DAP/42DAP | 1.24874 | 0.724 |
47DAP/43DAP | 1.42624 | 0.201 |
52DAP/47DAP | 0.72181 | 0.211 |
57DAP/52DAP | 1.20736 | 0.718 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96913 | 0.432 |
17DAP/reference | 1.04077 | 0.764 |
27DAP/reference | 1.14766 | 0.039 |
39DAP/reference | 1.26723 | 0.015 |
41DAP/reference | 1.16681 | 0.054 |
42DAP/reference | 1.08511 | 1 |
43DAP/reference | 1.00748 | 1 |
47DAP/reference | 0.97597 | 0.445 |
52DAP/reference | 1.04852 | 0.766 |
57DAP/reference | 1.14871 | 0.239 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0746 | 0.398 |
27DAP/17DAP | 1.05084 | 0.909 |
39DAP/27DAP | 1.23944 | 0.267 |
41DAP/39DAP | 0.9595 | 0.893 |
42DAP/41DAP | 1.09556 | 0.559 |
43DAP/42DAP | 0.87772 | 0.07 |
47DAP/43DAP | 1.0544 | 0.805 |
52DAP/47DAP | 1.12794 | 0.543 |
57DAP/52DAP | 0.9503 | 0.352 |
57DAP/7DAP | 1.58744 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23455 | 0.108 |
17DAP/reference | 1.03091 | 0.896 |
27DAP/reference | 1.03845 | 0.664 |
39DAP/reference | 1.32213 | 0.053 |
41DAP/reference | 1.24113 | 0.017 |
42DAP/reference | 1.28882 | 0.037 |
43DAP/reference | 1.26722 | 0.066 |
47DAP/reference | 1.00791 | 1 |
52DAP/reference | 1.49828 | 0.021 |
57DAP/reference | 1.58533 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07182 | 0.279 |
17DAP/reference | 1.09362 | 0.21 |
27DAP/reference | 1.14622 | 0.203 |
39DAP/reference | 1.09273 | 0.263 |
41DAP/reference | 1.15944 | 0.042 |
42DAP/reference | 1.17288 | 0.351 |
43DAP/reference | 1.31079 | 0.268 |
47DAP/reference | 1.21056 | 0.02 |
52DAP/reference | 1.15659 | 0.223 |
57DAP/reference | 1.18301 | 0.094 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94419 | 0.335 |
17DAP/reference | 1.02295 | 0.898 |
27DAP/reference | 1.15015 | 0.046 |
39DAP/reference | 1.31581 | 0.011 |
41DAP/reference | 1.14613 | 0.537 |
42DAP/reference | 1.29166 | 0.06 |
43DAP/reference | 1.22543 | 0.069 |
47DAP/reference | 0.98524 | 0.626 |
52DAP/reference | 1.21892 | 0.153 |
57DAP/reference | 1.29868 | 0.072 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.94798 | 1 |
26DAP/20DAP | 1.05412 | 1 |
34DAP/26DAP | 1.03816 | 1 |
51DAP/34DAP | 0.92927 | 0.571 |
52DAP/51DAP | 0.76356 | 0.151 |
53DAP/52DAP | 1.00625 | 1 |
55DAP/53DAP | 1.00598 | 0.964 |
57DAP/55DAP | 1.10372 | 0.955 |
62DAP/57DAP | 0.93013 | 0.994 |
68DAP/62DAP | 0.91195 | 0.722 |
68DAP/14DAP | 0.80869 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.44881 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.0014 | 0.908 |
Mature Green Tomato/Ripe Tomato | 0.93177 | 0.611 |
Immature Eggplant/Mature Eggplant | 2.89371 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.45447 | 1 |
Mature Eggplant/Ripe Tomato | 0.60902 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.70276 | 0.605 |
1-1-2/M82 | 1.82637 | |
12-2/M82 | 0.95277 | 0.955 |
12-4/M82 | 0.76416 | 0.619 |
1-3/M82 | 1.46875 | |
2-1-1/M82 | 0.81161 | 0.465 |
2-1/M82 | 0.90925 | |
2-6/M82 | 0.80774 | 1 |
3-2/M82 | 0.8364 | |
4-1-1/M82 | 1.02196 | |
4-1/M82 | 0.75221 | |
4-3-2/M82 | 0.95156 | 1 |
4-3/M82 | 0.69058 | 0.611 |
5-3/M82 | 1.11753 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.11945 | 0.598 |
7-2/M82 | 0.93376 | 0.881 |
9-3-2/M82 | 0.91099 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12987 | 0.277 |
IL2-6/WTpooled | 0.9371 | 0.473 |
IL7-5/WTpooled | 1.16847 | 0.792 |
IL7-3/WTpooled | 0.98603 | 1 |
IL12-4/WTpooled | 1.07371 | 0.737 |
IL1-4/WTpooled | 1.14768 | 1 |
WT/WTpooled | 0.97401 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9136 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08516 | 0.629 |
DC3000/delta hrp 6h | 0.99406 | 0.95 |
DC3000/delta hrp 12h | 0.99496 | 1 |
DC3000/delta hrp 24h | 0.89744 | 0.379 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.92249 | |
DC3000 delta B/DC3000 delta AB | 0.67613 | 0.029 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.24197 | 1 |
Exp 36h | 0.74009 | 0.504 |
Exp 60h | 0.66402 | 0.257 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99696 | 1 |
Var 0h | 0.49315 | 1 |
Var 12h I row2-row1 | 0.84832 | 0.338 |
Var 12h NI row2-row1 | 1.04977 | 0.34 |
Var 36h I row2-row1 | 0.88898 | 1 |
Var 36h NI row2-row1 | 1.02016 | 1 |
Var 60h I row2-row1 | 0.9146 | 0.306 |
Var 60h NI row2-row1 | 0.84912 | 0.516 |
Time course 0hI-0hNI | 1.04113 | 0.764 |
Time course 12hI-12hNI | 1.02525 | 0.756 |
Time course 36hI-36hNI | 1.26125 | 0.028 |
Time course 60hI-60hNI | 1.2836 | 0.017 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9448 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 0.89432 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.87964 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05142 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.54717 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.20701 | 0.083 |
Manapal/WT (break) | 1.79018 | 0.123 |
Manapal/WT (red) | 1.21214 | 0.222 |
|
|