Expression of 1-1-3.1.6.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.137230.452
27DAP/17DAP1.162280.833
39DAP/27DAP1.2060.507
41DAP/39DAP0.931590.63
42DAP/41DAP1.202670.844
43DAP/42DAP1.248740.724
47DAP/43DAP1.426240.201
52DAP/47DAP0.721810.211
57DAP/52DAP1.207360.718

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.969130.432
17DAP/reference1.040770.764
27DAP/reference1.147660.039
39DAP/reference1.267230.015
41DAP/reference1.166810.054
42DAP/reference1.085111
43DAP/reference1.007481
47DAP/reference0.975970.445
52DAP/reference1.048520.766
57DAP/reference1.148710.239

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.07460.398
27DAP/17DAP1.050840.909
39DAP/27DAP1.239440.267
41DAP/39DAP0.95950.893
42DAP/41DAP1.095560.559
43DAP/42DAP0.877720.07
47DAP/43DAP1.05440.805
52DAP/47DAP1.127940.543
57DAP/52DAP0.95030.352
57DAP/7DAP1.587441

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.234550.108
17DAP/reference1.030910.896
27DAP/reference1.038450.664
39DAP/reference1.322130.053
41DAP/reference1.241130.017
42DAP/reference1.288820.037
43DAP/reference1.267220.066
47DAP/reference1.007911
52DAP/reference1.498280.021
57DAP/reference1.585330.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.071820.279
17DAP/reference1.093620.21
27DAP/reference1.146220.203
39DAP/reference1.092730.263
41DAP/reference1.159440.042
42DAP/reference1.172880.351
43DAP/reference1.310790.268
47DAP/reference1.210560.02
52DAP/reference1.156590.223
57DAP/reference1.183010.094

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.944190.335
17DAP/reference1.022950.898
27DAP/reference1.150150.046
39DAP/reference1.315810.011
41DAP/reference1.146130.537
42DAP/reference1.291660.06
43DAP/reference1.225430.069
47DAP/reference0.985240.626
52DAP/reference1.218920.153
57DAP/reference1.298680.072

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.947981
26DAP/20DAP1.054121
34DAP/26DAP1.038161
51DAP/34DAP0.929270.571
52DAP/51DAP0.763560.151
53DAP/52DAP1.006251
55DAP/53DAP1.005980.964
57DAP/55DAP1.103720.955
62DAP/57DAP0.930130.994
68DAP/62DAP0.911950.722
68DAP/14DAP0.808691

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.448810.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.00140.908
Mature Green Tomato/Ripe Tomato0.931770.611
Immature Eggplant/Mature Eggplant2.893710.05
Ripe Pepper/Ripe Tomato1.454471
Mature Eggplant/Ripe Tomato0.609020.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.702760.605
1-1-2/M821.82637
12-2/M820.952770.955
12-4/M820.764160.619
1-3/M821.46875
2-1-1/M820.811610.465
2-1/M820.90925
2-6/M820.807741
3-2/M820.8364
4-1-1/M821.02196
4-1/M820.75221
4-3-2/M820.951561
4-3/M820.690580.611
5-3/M821.117531
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.119450.598
7-2/M820.933760.881
9-3-2/M820.91099

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.129870.277
IL2-6/WTpooled0.93710.473
IL7-5/WTpooled1.168470.792
IL7-3/WTpooled0.986031
IL12-4/WTpooled1.073710.737
IL1-4/WTpooled1.147681
WT/WTpooled0.974011

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.91360.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.085160.629
DC3000/delta hrp 6h0.994060.95
DC3000/delta hrp 12h0.994961
DC3000/delta hrp 24h0.897440.379

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.92249
DC3000 delta B/DC3000 delta AB0.676130.029

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.241971
Exp 36h0.740090.504
Exp 60h0.664020.257

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.996961
Var 0h0.493151
Var 12h I row2-row10.848320.338
Var 12h NI row2-row11.049770.34
Var 36h I row2-row10.888981
Var 36h NI row2-row11.020161
Var 60h I row2-row10.91460.306
Var 60h NI row2-row10.849120.516
Time course 0hI-0hNI1.041130.764
Time course 12hI-12hNI1.025250.756
Time course 36hI-36hNI1.261250.028
Time course 60hI-60hNI1.28360.017

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.94480.567
transgenic ySAMdc/azygous control (breaker)0.894320.173
transgenic ySAMdc/azygous control (red)0.879641

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.051420.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.547170.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.207010.083
Manapal/WT (break)1.790180.123
Manapal/WT (red)1.212140.222