Expression of 1-1-3.1.6.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08247 | 0.725 |
27DAP/17DAP | 1.0038 | 0.93 |
39DAP/27DAP | 0.92549 | 0.62 |
41DAP/39DAP | 1.262 | 0.342 |
42DAP/41DAP | 1.02449 | 1 |
43DAP/42DAP | 0.97104 | 0.898 |
47DAP/43DAP | 0.96682 | 0.864 |
52DAP/47DAP | 1.21872 | 0.549 |
57DAP/52DAP | 1.09059 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04915 | 0.928 |
17DAP/reference | 1.2909 | 0.064 |
27DAP/reference | 1.14628 | 0.227 |
39DAP/reference | 1.11044 | 0.486 |
41DAP/reference | 1.23306 | 0.067 |
42DAP/reference | 1.00256 | 0.608 |
43DAP/reference | 1.13262 | 0.042 |
47DAP/reference | 0.84576 | 0.018 |
52DAP/reference | 0.86942 | 0.102 |
57DAP/reference | 0.83263 | 0.013 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02167 | 0.63 |
27DAP/17DAP | 1.00349 | 1 |
39DAP/27DAP | 0.99509 | 1 |
41DAP/39DAP | 1.02182 | 0.801 |
42DAP/41DAP | 1.02712 | 0.727 |
43DAP/42DAP | 0.98775 | 0.684 |
47DAP/43DAP | 0.99782 | 1 |
52DAP/47DAP | 1.00476 | 0.991 |
57DAP/52DAP | 1.04331 | 0.745 |
57DAP/7DAP | 1.0215 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02006 | 1 |
17DAP/reference | 0.95833 | 0.094 |
27DAP/reference | 0.9475 | 0.039 |
39DAP/reference | 1.00722 | 1 |
41DAP/reference | 1.01805 | 0.791 |
42DAP/reference | 1.04687 | 0.174 |
43DAP/reference | 0.98418 | 0.351 |
47DAP/reference | 1.04385 | 0.561 |
52DAP/reference | 1.00345 | 1 |
57DAP/reference | 0.9656 | 0.066 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23319 | 0.083 |
17DAP/reference | 1.14417 | 0.176 |
27DAP/reference | 0.87119 | 0.16 |
39DAP/reference | 1.17428 | 0.725 |
41DAP/reference | 1.51784 | 0.45 |
42DAP/reference | 0.88521 | 0.067 |
43DAP/reference | 1.15062 | 0.553 |
47DAP/reference | 0.81261 | 0.232 |
52DAP/reference | 1.0746 | 0.559 |
57DAP/reference | 1.45413 | 0.068 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05419 | 0.691 |
17DAP/reference | 1.05546 | 0.738 |
27DAP/reference | 0.94496 | 0.062 |
39DAP/reference | 0.95966 | 0.163 |
41DAP/reference | 0.95542 | 0.019 |
42DAP/reference | 0.84092 | 0.134 |
43DAP/reference | 0.89789 | 0.281 |
47DAP/reference | 0.89804 | 0.191 |
52DAP/reference | 0.88044 | 0.268 |
57DAP/reference | 0.67885 | 0.019 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01924 | 1 |
26DAP/20DAP | 0.95699 | 1 |
34DAP/26DAP | 1.01044 | 1 |
51DAP/34DAP | 1.01654 | 0.883 |
52DAP/51DAP | 0.98301 | 1 |
53DAP/52DAP | 1.03886 | 0.753 |
55DAP/53DAP | 0.97796 | 0.852 |
57DAP/55DAP | 1.10527 | 0.71 |
62DAP/57DAP | 0.89261 | 0.871 |
68DAP/62DAP | 0.69907 | 0.29 |
68DAP/14DAP | 0.72371 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.03557 | 0.439 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.36727 | 0.299 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.20945 | |
Mature Eggplant/Ripe Tomato | 0.16064 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0153 | 1 |
1-1-2/M82 | 0.93846 | |
12-2/M82 | 1.0849 | 1 |
12-4/M82 | 0.93335 | 1 |
1-3/M82 | 0.82974 | |
2-1-1/M82 | 1.09714 | |
2-1/M82 | 0.77866 | |
2-6/M82 | 0.96579 | 1 |
3-2/M82 | 1.0364 | |
4-1-1/M82 | 0.81338 | |
4-1/M82 | 0.95588 | 1 |
4-3-2/M82 | 1.00206 | 1 |
4-3/M82 | 1.04245 | 1 |
5-3/M82 | 1.01803 | 1 |
6-2/M82 | 0.98357 | |
6-3/M82 | 1.03213 | 1 |
7-1/M82 | 1.06458 | 0.598 |
7-2/M82 | 1.06789 | 0.385 |
9-3-2/M82 | 0.85937 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.78613 | 0.71 |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | 1.22948 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.88997 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98682 | 1 |
DC3000/delta hrp 6h | 1.37242 | 1 |
DC3000/delta hrp 12h | 1.07133 | 1 |
DC3000/delta hrp 24h | 1.02746 | 0.673 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.10544 | 0.384 |
DC3000 delta B/DC3000 delta AB | 0.92217 | 0.183 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03419 | 1 |
Var 0h | 0.47717 | 0.933 |
Var 12h I row2-row1 | 1.13575 | 0.196 |
Var 12h NI row2-row1 | 0.98292 | 0.906 |
Var 36h I row2-row1 | 0.97567 | 1 |
Var 36h NI row2-row1 | 0.95004 | 0.706 |
Var 60h I row2-row1 | 1.20385 | 0.562 |
Var 60h NI row2-row1 | 1.2559 | 0.904 |
Time course 0hI-0hNI | 1.02181 | 1 |
Time course 12hI-12hNI | 1.08122 | 0.593 |
Time course 36hI-36hNI | 0.93076 | 0.183 |
Time course 60hI-60hNI | 0.89028 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96521 | 0.789 |
transgenic ySAMdc/azygous control (breaker) | 0.98071 | 1 |
transgenic ySAMdc/azygous control (red) | 0.91459 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99973 | 0.94 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87673 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.89925 | 1 |
Manapal/WT (break) | 0.89155 | 1 |
Manapal/WT (red) | 0.82651 | 0.424 |
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