Expression of 1-1-3.1.6.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.082470.725
27DAP/17DAP1.00380.93
39DAP/27DAP0.925490.62
41DAP/39DAP1.2620.342
42DAP/41DAP1.024491
43DAP/42DAP0.971040.898
47DAP/43DAP0.966820.864
52DAP/47DAP1.218720.549
57DAP/52DAP1.090590.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.049150.928
17DAP/reference1.29090.064
27DAP/reference1.146280.227
39DAP/reference1.110440.486
41DAP/reference1.233060.067
42DAP/reference1.002560.608
43DAP/reference1.132620.042
47DAP/reference0.845760.018
52DAP/reference0.869420.102
57DAP/reference0.832630.013

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.021670.63
27DAP/17DAP1.003491
39DAP/27DAP0.995091
41DAP/39DAP1.021820.801
42DAP/41DAP1.027120.727
43DAP/42DAP0.987750.684
47DAP/43DAP0.997821
52DAP/47DAP1.004760.991
57DAP/52DAP1.043310.745
57DAP/7DAP1.02151

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.020061
17DAP/reference0.958330.094
27DAP/reference0.94750.039
39DAP/reference1.007221
41DAP/reference1.018050.791
42DAP/reference1.046870.174
43DAP/reference0.984180.351
47DAP/reference1.043850.561
52DAP/reference1.003451
57DAP/reference0.96560.066

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.233190.083
17DAP/reference1.144170.176
27DAP/reference0.871190.16
39DAP/reference1.174280.725
41DAP/reference1.517840.45
42DAP/reference0.885210.067
43DAP/reference1.150620.553
47DAP/reference0.812610.232
52DAP/reference1.07460.559
57DAP/reference1.454130.068

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.054190.691
17DAP/reference1.055460.738
27DAP/reference0.944960.062
39DAP/reference0.959660.163
41DAP/reference0.955420.019
42DAP/reference0.840920.134
43DAP/reference0.897890.281
47DAP/reference0.898040.191
52DAP/reference0.880440.268
57DAP/reference0.678850.019

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.019241
26DAP/20DAP0.956991
34DAP/26DAP1.010441
51DAP/34DAP1.016540.883
52DAP/51DAP0.983011
53DAP/52DAP1.038860.753
55DAP/53DAP0.977960.852
57DAP/55DAP1.105270.71
62DAP/57DAP0.892610.871
68DAP/62DAP0.699070.29
68DAP/14DAP0.723710.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.035570.439

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.367270.299
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.20945
Mature Eggplant/Ripe Tomato0.160641

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.01531
1-1-2/M820.93846
12-2/M821.08491
12-4/M820.933351
1-3/M820.82974
2-1-1/M821.09714
2-1/M820.77866
2-6/M820.965791
3-2/M821.0364
4-1-1/M820.81338
4-1/M820.955881
4-3-2/M821.002061
4-3/M821.042451
5-3/M821.018031
6-2/M820.98357
6-3/M821.032131
7-1/M821.064580.598
7-2/M821.067890.385
9-3-2/M820.859370.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.786130.71
IL1-4/WTpooledN/AN/A
WT/WTpooled1.229481

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.889970.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.986821
DC3000/delta hrp 6h1.372421
DC3000/delta hrp 12h1.071331
DC3000/delta hrp 24h1.027460.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.105440.384
DC3000 delta B/DC3000 delta AB0.922170.183

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.034191
Var 0h0.477170.933
Var 12h I row2-row11.135750.196
Var 12h NI row2-row10.982920.906
Var 36h I row2-row10.975671
Var 36h NI row2-row10.950040.706
Var 60h I row2-row11.203850.562
Var 60h NI row2-row11.25590.904
Time course 0hI-0hNI1.021811
Time course 12hI-12hNI1.081220.593
Time course 36hI-36hNI0.930760.183
Time course 60hI-60hNI0.890280.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.965210.789
transgenic ySAMdc/azygous control (breaker)0.980711
transgenic ySAMdc/azygous control (red)0.914591

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.999730.94

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.876730.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.899251
Manapal/WT (break)0.891551
Manapal/WT (red)0.826510.424