Expression of 1-1-3.1.7.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12086 | 0.67 |
27DAP/17DAP | 1.18627 | 0.8 |
39DAP/27DAP | 0.68736 | 0.289 |
41DAP/39DAP | 1.13195 | 0.545 |
42DAP/41DAP | 1.00537 | 1 |
43DAP/42DAP | 1.02081 | 0.937 |
47DAP/43DAP | 1.05421 | 0.889 |
52DAP/47DAP | 0.83464 | 0.559 |
57DAP/52DAP | 0.98059 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89785 | 0.14 |
17DAP/reference | 1.1012 | 0.282 |
27DAP/reference | 0.94947 | 0.349 |
39DAP/reference | 1.11949 | 0.111 |
41DAP/reference | 1.16649 | 0.038 |
42DAP/reference | 0.91116 | 0.024 |
43DAP/reference | 1.11188 | 0.102 |
47DAP/reference | 0.86734 | 0.007 |
52DAP/reference | 0.88144 | 0.177 |
57DAP/reference | 0.92412 | 0.124 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99079 | 0.826 |
27DAP/17DAP | 1.02348 | 0.915 |
39DAP/27DAP | 0.98092 | 0.768 |
41DAP/39DAP | 1.01959 | 0.853 |
42DAP/41DAP | 1.05028 | 0.495 |
43DAP/42DAP | 0.97811 | 0.538 |
47DAP/43DAP | 0.99188 | 0.977 |
52DAP/47DAP | 1.03974 | 0.835 |
57DAP/52DAP | 1.02552 | 0.899 |
57DAP/7DAP | 1.00896 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93757 | 0.246 |
17DAP/reference | 0.94386 | 0.082 |
27DAP/reference | 0.94511 | 0.01 |
39DAP/reference | 0.94054 | 0.049 |
41DAP/reference | 0.98042 | 0.326 |
42DAP/reference | 0.92363 | 0.032 |
43DAP/reference | 0.95065 | 0.105 |
47DAP/reference | 0.91382 | 0.168 |
52DAP/reference | 1.01262 | 1 |
57DAP/reference | 0.94083 | 0.052 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09255 | 0.337 |
17DAP/reference | 1.05519 | 0.859 |
27DAP/reference | 0.87245 | 0.134 |
39DAP/reference | 0.94364 | 0.281 |
41DAP/reference | 0.90802 | 0.25 |
42DAP/reference | 0.79226 | 0.03 |
43DAP/reference | 1.27126 | 0.268 |
47DAP/reference | 0.8087 | 0.03 |
52DAP/reference | 1.1715 | 0.114 |
57DAP/reference | 1.15253 | 0.508 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87187 | 0.092 |
17DAP/reference | 0.96978 | 0.528 |
27DAP/reference | 0.92599 | 0.092 |
39DAP/reference | 0.94155 | 0.037 |
41DAP/reference | 1.0012 | 1 |
42DAP/reference | 0.84172 | 0.028 |
43DAP/reference | 0.85505 | 0.12 |
47DAP/reference | 0.97299 | 0.509 |
52DAP/reference | 0.91081 | 0.247 |
57DAP/reference | 0.69981 | 0.017 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90212 | 1 |
26DAP/20DAP | 0.9437 | 1 |
34DAP/26DAP | 0.99016 | 1 |
51DAP/34DAP | 1.09207 | 0.637 |
52DAP/51DAP | 1.01621 | 0.86 |
53DAP/52DAP | 1.01849 | 0.921 |
55DAP/53DAP | 0.94177 | 0.648 |
57DAP/55DAP | 1.15678 | 0.274 |
62DAP/57DAP | 0.91773 | 0.994 |
68DAP/62DAP | 0.96649 | 0.834 |
68DAP/14DAP | 0.83953 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.00261 | 0.855 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.96073 | 0.577 |
Mature Green Tomato/Ripe Tomato | 0.87406 | 0.256 |
Immature Eggplant/Mature Eggplant | 4.6015 | 0.165 |
Ripe Pepper/Ripe Tomato | 1.21595 | 1 |
Mature Eggplant/Ripe Tomato | 0.44863 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04926 | 1 |
1-1-2/M82 | 0.80872 | |
12-2/M82 | 1.17985 | |
12-4/M82 | 0.93441 | 1 |
1-3/M82 | 0.88735 | 0.378 |
2-1-1/M82 | 1.10663 | 0.689 |
2-1/M82 | 1.386 | |
2-6/M82 | 0.96895 | 1 |
3-2/M82 | 0.98123 | |
4-1-1/M82 | 0.96316 | 1 |
4-1/M82 | 0.89013 | |
4-3-2/M82 | 0.81989 | |
4-3/M82 | 0.97817 | 1 |
5-3/M82 | 1.05972 | 1 |
6-2/M82 | 1.00371 | |
6-3/M82 | 0.93684 | 0.982 |
7-1/M82 | 0.93621 | 0.803 |
7-2/M82 | 1.01943 | 0.324 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.8734 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.89071 | 1 |
IL12-4/WTpooled | 0.87156 | 1 |
IL1-4/WTpooled | 0.9209 | 0.834 |
WT/WTpooled | 0.99235 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.39395 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96504 | 1 |
DC3000/delta hrp 6h | 0.61211 | |
DC3000/delta hrp 12h | 0.98497 | 1 |
DC3000/delta hrp 24h | 1.03056 | 0.71 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.95977 | 0.691 |
DC3000 delta B/DC3000 delta AB | 0.96108 | 0.589 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.71557 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03086 | 1 |
Var 0h | 0.97158 | 1 |
Var 12h I row2-row1 | 1.18649 | 0.196 |
Var 12h NI row2-row1 | 1.03746 | 1 |
Var 36h I row2-row1 | 0.95189 | 1 |
Var 36h NI row2-row1 | 0.8721 | 0.378 |
Var 60h I row2-row1 | 1.19541 | 0.562 |
Var 60h NI row2-row1 | 0.91536 | 0.756 |
Time course 0hI-0hNI | 1.03952 | 1 |
Time course 12hI-12hNI | 1.01313 | 0.892 |
Time course 36hI-36hNI | 0.97869 | 0.549 |
Time course 60hI-60hNI | 1.07516 | 0.359 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95181 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 1.08608 | 1 |
transgenic ySAMdc/azygous control (red) | 0.86771 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97036 | 0.186 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.99494 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0011 | 1 |
Manapal/WT (break) | 0.65407 | 0.333 |
Manapal/WT (red) | 1.20281 | 0.413 |
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