Expression of 1-1-3.1.7.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.120860.67
27DAP/17DAP1.186270.8
39DAP/27DAP0.687360.289
41DAP/39DAP1.131950.545
42DAP/41DAP1.005371
43DAP/42DAP1.020810.937
47DAP/43DAP1.054210.889
52DAP/47DAP0.834640.559
57DAP/52DAP0.980590.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.897850.14
17DAP/reference1.10120.282
27DAP/reference0.949470.349
39DAP/reference1.119490.111
41DAP/reference1.166490.038
42DAP/reference0.911160.024
43DAP/reference1.111880.102
47DAP/reference0.867340.007
52DAP/reference0.881440.177
57DAP/reference0.924120.124

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.990790.826
27DAP/17DAP1.023480.915
39DAP/27DAP0.980920.768
41DAP/39DAP1.019590.853
42DAP/41DAP1.050280.495
43DAP/42DAP0.978110.538
47DAP/43DAP0.991880.977
52DAP/47DAP1.039740.835
57DAP/52DAP1.025520.899
57DAP/7DAP1.008961

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.937570.246
17DAP/reference0.943860.082
27DAP/reference0.945110.01
39DAP/reference0.940540.049
41DAP/reference0.980420.326
42DAP/reference0.923630.032
43DAP/reference0.950650.105
47DAP/reference0.913820.168
52DAP/reference1.012621
57DAP/reference0.940830.052

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.092550.337
17DAP/reference1.055190.859
27DAP/reference0.872450.134
39DAP/reference0.943640.281
41DAP/reference0.908020.25
42DAP/reference0.792260.03
43DAP/reference1.271260.268
47DAP/reference0.80870.03
52DAP/reference1.17150.114
57DAP/reference1.152530.508

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.871870.092
17DAP/reference0.969780.528
27DAP/reference0.925990.092
39DAP/reference0.941550.037
41DAP/reference1.00121
42DAP/reference0.841720.028
43DAP/reference0.855050.12
47DAP/reference0.972990.509
52DAP/reference0.910810.247
57DAP/reference0.699810.017

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.902121
26DAP/20DAP0.94371
34DAP/26DAP0.990161
51DAP/34DAP1.092070.637
52DAP/51DAP1.016210.86
53DAP/52DAP1.018490.921
55DAP/53DAP0.941770.648
57DAP/55DAP1.156780.274
62DAP/57DAP0.917730.994
68DAP/62DAP0.966490.834
68DAP/14DAP0.839531

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.002610.855

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.960730.577
Mature Green Tomato/Ripe Tomato0.874060.256
Immature Eggplant/Mature Eggplant4.60150.165
Ripe Pepper/Ripe Tomato1.215951
Mature Eggplant/Ripe Tomato0.448630.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.049261
1-1-2/M820.80872
12-2/M821.17985
12-4/M820.934411
1-3/M820.887350.378
2-1-1/M821.106630.689
2-1/M821.386
2-6/M820.968951
3-2/M820.98123
4-1-1/M820.963161
4-1/M820.89013
4-3-2/M820.81989
4-3/M820.978171
5-3/M821.059721
6-2/M821.00371
6-3/M820.936840.982
7-1/M820.936210.803
7-2/M821.019430.324
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.87341
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.890711
IL12-4/WTpooled0.871561
IL1-4/WTpooled0.92090.834
WT/WTpooled0.992351

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.393950.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.965041
DC3000/delta hrp 6h0.61211
DC3000/delta hrp 12h0.984971
DC3000/delta hrp 24h1.030560.71

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.959770.691
DC3000 delta B/DC3000 delta AB0.961080.589

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.715570.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.030861
Var 0h0.971581
Var 12h I row2-row11.186490.196
Var 12h NI row2-row11.037461
Var 36h I row2-row10.951891
Var 36h NI row2-row10.87210.378
Var 60h I row2-row11.195410.562
Var 60h NI row2-row10.915360.756
Time course 0hI-0hNI1.039521
Time course 12hI-12hNI1.013130.892
Time course 36hI-36hNI0.978690.549
Time course 60hI-60hNI1.075160.359

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.951810.614
transgenic ySAMdc/azygous control (breaker)1.086081
transgenic ySAMdc/azygous control (red)0.867711

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.970360.186

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.994940.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.00111
Manapal/WT (break)0.654070.333
Manapal/WT (red)1.202810.413