Expression of 1-1-3.1.8.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.87672 | 0.373 |
27DAP/17DAP | 0.96439 | 0.957 |
39DAP/27DAP | 0.95557 | 0.67 |
41DAP/39DAP | 0.88886 | 0.552 |
42DAP/41DAP | 1.13894 | 0.841 |
43DAP/42DAP | 0.94837 | 0.887 |
47DAP/43DAP | 1.05752 | 0.909 |
52DAP/47DAP | 1.1861 | 0.801 |
57DAP/52DAP | 1.00844 | 0.988 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36058 | 0.009 |
17DAP/reference | 1.20326 | 0.061 |
27DAP/reference | 1.0818 | 0.529 |
39DAP/reference | 1.07334 | 0.453 |
41DAP/reference | 1.16714 | 0.041 |
42DAP/reference | 1.02104 | 0.901 |
43DAP/reference | 1.16205 | 0.089 |
47DAP/reference | 1.13143 | 0.042 |
52DAP/reference | 1.0638 | 0.878 |
57DAP/reference | 1.31212 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98614 | 0.763 |
27DAP/17DAP | 1.04195 | 0.885 |
39DAP/27DAP | 0.9861 | 0.919 |
41DAP/39DAP | 1.05992 | 0.682 |
42DAP/41DAP | 1.00283 | 0.926 |
43DAP/42DAP | 0.90137 | 0.044 |
47DAP/43DAP | 1.00216 | 1 |
52DAP/47DAP | 0.94091 | 0.719 |
57DAP/52DAP | 0.98237 | 0.742 |
57DAP/7DAP | 1.25358 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20889 | 0.17 |
17DAP/reference | 1.24185 | 0.042 |
27DAP/reference | 1.06331 | 0.246 |
39DAP/reference | 1.01025 | 1 |
41DAP/reference | 0.96412 | 0.431 |
42DAP/reference | 0.93807 | 0.32 |
43DAP/reference | 0.70584 | 0.011 |
47DAP/reference | 1.02503 | 1 |
52DAP/reference | 0.89981 | 0.072 |
57DAP/reference | 1.07887 | 0.232 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25301 | 0.184 |
17DAP/reference | 1.27191 | 0.05 |
27DAP/reference | 1.25436 | 0.221 |
39DAP/reference | 1.16333 | 0.09 |
41DAP/reference | 0.98149 | 0.481 |
42DAP/reference | 1.1254 | 0.121 |
43DAP/reference | 1.00683 | 0.875 |
47DAP/reference | 1.11406 | 0.098 |
52DAP/reference | 0.97727 | 0.469 |
57DAP/reference | 0.92408 | 0.298 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.27539 | 0.019 |
17DAP/reference | 1.07614 | 0.602 |
27DAP/reference | 0.78799 | 0.032 |
39DAP/reference | 0.96961 | 0.43 |
41DAP/reference | 0.87668 | 0.096 |
42DAP/reference | 0.84612 | 0.059 |
43DAP/reference | 1.02882 | 0.855 |
47DAP/reference | 1.15023 | 0.388 |
52DAP/reference | 1.31365 | 0.119 |
57DAP/reference | 1.22065 | 0.049 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.12943 | 0.966 |
26DAP/20DAP | 1.08425 | 0.727 |
34DAP/26DAP | 0.9665 | 0.936 |
51DAP/34DAP | 0.87725 | 0.281 |
52DAP/51DAP | 1.05129 | 0.689 |
53DAP/52DAP | 1.03541 | 0.935 |
55DAP/53DAP | 1.07218 | 0.737 |
57DAP/55DAP | 1.24064 | 0.881 |
62DAP/57DAP | 1.32012 | 0.057 |
68DAP/62DAP | 1.03136 | 0.939 |
68DAP/14DAP | 0.99304 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.16951 | 0.113 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.00231 | 0.908 |
Mature Green Tomato/Ripe Tomato | 1.24263 | 0.016 |
Immature Eggplant/Mature Eggplant | 1.21114 | 0.105 |
Ripe Pepper/Ripe Tomato | 0.69473 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.23245 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98403 | 0.961 |
1-1-2/M82 | 0.78383 | |
12-2/M82 | 0.87951 | 0.955 |
12-4/M82 | 1.02942 | 1 |
1-3/M82 | 1.5308 | 0.248 |
2-1-1/M82 | 1.12594 | 0.457 |
2-1/M82 | 0.98823 | 1 |
2-6/M82 | 1.14631 | 0.594 |
3-2/M82 | 1.10712 | 0.967 |
4-1-1/M82 | 0.78352 | |
4-1/M82 | 1.2997 | 1 |
4-3-2/M82 | 1.74637 | |
4-3/M82 | 1.32339 | 0.268 |
5-3/M82 | 1.18087 | 0.455 |
6-2/M82 | 1.17871 | |
6-3/M82 | 1.09449 | 1 |
7-1/M82 | 0.89635 | |
7-2/M82 | 1.13265 | 1 |
9-3-2/M82 | 1.05238 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.26588 | |
IL12-4/WTpooled | 0.70068 | 0.566 |
IL1-4/WTpooled | 1.13516 | 1 |
WT/WTpooled | 0.94625 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.2479 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00365 | 1 |
DC3000/delta hrp 6h | 0.98214 | 0.95 |
DC3000/delta hrp 12h | 1.06131 | 1 |
DC3000/delta hrp 24h | 0.97885 | 0.897 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.14947 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.0838 | 0.423 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.71819 | 1 |
Exp 36h | 1.12057 | 1 |
Exp 60h | 0.99186 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01511 | 1 |
Var 0h | 0.50587 | 1 |
Var 12h I row2-row1 | 1.0447 | 0.736 |
Var 12h NI row2-row1 | 0.96819 | 0.906 |
Var 36h I row2-row1 | 0.98713 | 1 |
Var 36h NI row2-row1 | 0.85526 | 0.549 |
Var 60h I row2-row1 | 0.9346 | 0.582 |
Var 60h NI row2-row1 | 1.33613 | 0.904 |
Time course 0hI-0hNI | 0.92532 | 0.39 |
Time course 12hI-12hNI | 1.04688 | 0.587 |
Time course 36hI-36hNI | 1.23614 | 0.147 |
Time course 60hI-60hNI | 1.68177 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08551 | 0.347 |
transgenic ySAMdc/azygous control (breaker) | 1.55206 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.30166 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.1836 | 0.073 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.05768 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.93993 | 1 |
Manapal/WT (break) | 1.18176 | 0.183 |
Manapal/WT (red) | 1.12555 | 0.413 |
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