Expression of 1-1-3.1.8.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.876720.373
27DAP/17DAP0.964390.957
39DAP/27DAP0.955570.67
41DAP/39DAP0.888860.552
42DAP/41DAP1.138940.841
43DAP/42DAP0.948370.887
47DAP/43DAP1.057520.909
52DAP/47DAP1.18610.801
57DAP/52DAP1.008440.988

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.360580.009
17DAP/reference1.203260.061
27DAP/reference1.08180.529
39DAP/reference1.073340.453
41DAP/reference1.167140.041
42DAP/reference1.021040.901
43DAP/reference1.162050.089
47DAP/reference1.131430.042
52DAP/reference1.06380.878
57DAP/reference1.312120.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.986140.763
27DAP/17DAP1.041950.885
39DAP/27DAP0.98610.919
41DAP/39DAP1.059920.682
42DAP/41DAP1.002830.926
43DAP/42DAP0.901370.044
47DAP/43DAP1.002161
52DAP/47DAP0.940910.719
57DAP/52DAP0.982370.742
57DAP/7DAP1.253580.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.208890.17
17DAP/reference1.241850.042
27DAP/reference1.063310.246
39DAP/reference1.010251
41DAP/reference0.964120.431
42DAP/reference0.938070.32
43DAP/reference0.705840.011
47DAP/reference1.025031
52DAP/reference0.899810.072
57DAP/reference1.078870.232

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.253010.184
17DAP/reference1.271910.05
27DAP/reference1.254360.221
39DAP/reference1.163330.09
41DAP/reference0.981490.481
42DAP/reference1.12540.121
43DAP/reference1.006830.875
47DAP/reference1.114060.098
52DAP/reference0.977270.469
57DAP/reference0.924080.298

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.275390.019
17DAP/reference1.076140.602
27DAP/reference0.787990.032
39DAP/reference0.969610.43
41DAP/reference0.876680.096
42DAP/reference0.846120.059
43DAP/reference1.028820.855
47DAP/reference1.150230.388
52DAP/reference1.313650.119
57DAP/reference1.220650.049

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.129430.966
26DAP/20DAP1.084250.727
34DAP/26DAP0.96650.936
51DAP/34DAP0.877250.281
52DAP/51DAP1.051290.689
53DAP/52DAP1.035410.935
55DAP/53DAP1.072180.737
57DAP/55DAP1.240640.881
62DAP/57DAP1.320120.057
68DAP/62DAP1.031360.939
68DAP/14DAP0.993041

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.169510.113

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.002310.908
Mature Green Tomato/Ripe Tomato1.242630.016
Immature Eggplant/Mature Eggplant1.211140.105
Ripe Pepper/Ripe Tomato0.694730.224
Mature Eggplant/Ripe Tomato1.232450.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.984030.961
1-1-2/M820.78383
12-2/M820.879510.955
12-4/M821.029421
1-3/M821.53080.248
2-1-1/M821.125940.457
2-1/M820.988231
2-6/M821.146310.594
3-2/M821.107120.967
4-1-1/M820.78352
4-1/M821.29971
4-3-2/M821.74637
4-3/M821.323390.268
5-3/M821.180870.455
6-2/M821.17871
6-3/M821.094491
7-1/M820.89635
7-2/M821.132651
9-3-2/M821.052381

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.26588
IL12-4/WTpooled0.700680.566
IL1-4/WTpooled1.135161
WT/WTpooled0.94625

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.24790.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.003651
DC3000/delta hrp 6h0.982140.95
DC3000/delta hrp 12h1.061311
DC3000/delta hrp 24h0.978850.897

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.149470.145
DC3000 delta B/DC3000 delta AB1.08380.423

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.718191
Exp 36h1.120571
Exp 60h0.991860.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.015111
Var 0h0.505871
Var 12h I row2-row11.04470.736
Var 12h NI row2-row10.968190.906
Var 36h I row2-row10.987131
Var 36h NI row2-row10.855260.549
Var 60h I row2-row10.93460.582
Var 60h NI row2-row11.336130.904
Time course 0hI-0hNI0.925320.39
Time course 12hI-12hNI1.046880.587
Time course 36hI-36hNI1.236140.147
Time course 60hI-60hNI1.681770.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.085510.347
transgenic ySAMdc/azygous control (breaker)1.552060.178
transgenic ySAMdc/azygous control (red)1.301660.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.18360.073

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.057681

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.939931
Manapal/WT (break)1.181760.183
Manapal/WT (red)1.125550.413