Expression of 1-1-3.1.9.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.67235 | 0.015 |
27DAP/17DAP | 0.80624 | 0.46 |
39DAP/27DAP | 0.89857 | 0.608 |
41DAP/39DAP | 0.84518 | 0.422 |
42DAP/41DAP | 1.04624 | 0.974 |
43DAP/42DAP | 1.03446 | 1 |
47DAP/43DAP | 1.21883 | 0.52 |
52DAP/47DAP | 0.7671 | 0.403 |
57DAP/52DAP | 1.00016 | 0.985 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.71644 | 0.007 |
17DAP/reference | 1.28761 | 0.096 |
27DAP/reference | 1.25953 | 0.018 |
39DAP/reference | 0.97017 | 0.638 |
41DAP/reference | 0.85744 | 0.085 |
42DAP/reference | 1.07779 | 0.338 |
43DAP/reference | 0.80954 | 0.061 |
47DAP/reference | 0.91114 | 0.148 |
52DAP/reference | 0.69681 | 0.014 |
57DAP/reference | 0.84324 | 0.042 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.7849 | 0.055 |
27DAP/17DAP | 0.95754 | 0.748 |
39DAP/27DAP | 0.75965 | 0.029 |
41DAP/39DAP | 0.80202 | 0.059 |
42DAP/41DAP | 0.97647 | 0.777 |
43DAP/42DAP | 1.05087 | 0.513 |
47DAP/43DAP | 0.96338 | 0.787 |
52DAP/47DAP | 0.8994 | 0.612 |
57DAP/52DAP | 1.12707 | 0.36 |
57DAP/7DAP | 0.65017 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.68343 | 0.027 |
17DAP/reference | 1.14245 | 0.134 |
27DAP/reference | 0.91321 | 0.033 |
39DAP/reference | 0.78549 | 0.027 |
41DAP/reference | 0.838 | 0.116 |
42DAP/reference | 0.83266 | 0.058 |
43DAP/reference | 0.95086 | 0.21 |
47DAP/reference | 0.96081 | 0.383 |
52DAP/reference | 0.749 | 0.012 |
57DAP/reference | 0.88061 | 0.054 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52651 | 0.049 |
17DAP/reference | 1.42639 | 0.01 |
27DAP/reference | 1.14758 | 0.126 |
39DAP/reference | 0.8924 | 0.189 |
41DAP/reference | 1.03573 | 1 |
42DAP/reference | 1.07417 | 0.274 |
43DAP/reference | 0.79302 | 0.036 |
47DAP/reference | 0.97513 | 0.487 |
52DAP/reference | 0.66552 | 0.004 |
57DAP/reference | 0.764 | 0.021 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.25983 | 0.015 |
17DAP/reference | 1.44397 | 0.06 |
27DAP/reference | 1.12071 | 0.1 |
39DAP/reference | 0.94448 | 0.271 |
41DAP/reference | 0.9051 | 0.185 |
42DAP/reference | 0.95331 | 0.445 |
43DAP/reference | 0.95314 | 0.416 |
47DAP/reference | 0.86781 | 0.043 |
52DAP/reference | 0.85708 | 0.228 |
57DAP/reference | 0.83817 | 0.033 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04082 | 0.966 |
26DAP/20DAP | 1.76469 | 0.099 |
34DAP/26DAP | 1.03684 | 1 |
51DAP/34DAP | 0.6603 | 0.058 |
52DAP/51DAP | 1.00611 | 1 |
53DAP/52DAP | 0.70319 | 0.049 |
55DAP/53DAP | 0.67536 | 0.037 |
57DAP/55DAP | 1.18258 | 0.764 |
62DAP/57DAP | 1.04475 | 0.8 |
68DAP/62DAP | 0.8203 | 0.227 |
68DAP/14DAP | 0.68151 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.65322 | 0.038 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 3.53454 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.43278 | 0.022 |
Immature Eggplant/Mature Eggplant | 0.32152 | 0.057 |
Ripe Pepper/Ripe Tomato | 5.80036 | 1 |
Mature Eggplant/Ripe Tomato | 15.8334 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.13976 | |
1-1-2/M82 | 0.67761 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.71722 | 0.319 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.82511 | |
4-3-2/M82 | 0.69706 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.98589 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.90554 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.78254 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.17191 | 0.277 |
IL2-6/WTpooled | 0.76259 | 0.383 |
IL7-5/WTpooled | 0.90875 | 1 |
IL7-3/WTpooled | 1.26611 | 0.362 |
IL12-4/WTpooled | 1.12292 | 0.531 |
IL1-4/WTpooled | 0.9424 | 0.699 |
WT/WTpooled | 1.05024 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.84541 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95544 | 1 |
DC3000/delta hrp 6h | 1.31568 | 1 |
DC3000/delta hrp 12h | 1.50614 | 1 |
DC3000/delta hrp 24h | 0.45283 | 0.038 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.44801 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.50519 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90372 | 1 |
Exp 36h | 0.62223 | 0.406 |
Exp 60h | 0.50378 | 0.253 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01536 | 1 |
Var 0h | 1.32653 | 0.98 |
Var 12h I row2-row1 | 0.81906 | 0.338 |
Var 12h NI row2-row1 | 0.90823 | 0.82 |
Var 36h I row2-row1 | 1.03546 | 1 |
Var 36h NI row2-row1 | 1.0856 | 1 |
Var 60h I row2-row1 | 1.29162 | 0.562 |
Var 60h NI row2-row1 | 1.36988 | 0.904 |
Time course 0hI-0hNI | 0.97667 | 0.908 |
Time course 12hI-12hNI | 1.0051 | 1 |
Time course 36hI-36hNI | 0.79783 | 0.023 |
Time course 60hI-60hNI | 0.26839 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88543 | 0.33 |
transgenic ySAMdc/azygous control (breaker) | 1.10561 | 1 |
transgenic ySAMdc/azygous control (red) | 0.97868 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.8725 | 0.07 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.85589 | 0.231 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.08951 | 1 |
Manapal/WT (break) | 1.16353 | 1 |
Manapal/WT (red) | 1.50476 | 1 |
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