Expression of 1-1-3.2.1.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.121070.588
27DAP/17DAP1.10090.885
39DAP/27DAP1.288960.558
41DAP/39DAP0.916760.69
42DAP/41DAP1.199990.709
43DAP/42DAP0.961950.909
47DAP/43DAP1.292380.538
52DAP/47DAP1.242310.662
57DAP/52DAP0.913940.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.142790.188
17DAP/reference1.055480.384
27DAP/reference0.982840.711
39DAP/reference1.02640.722
41DAP/reference1.052840.338
42DAP/reference1.028870.706
43DAP/reference1.156350.111
47DAP/reference1.168630.009
52DAP/reference1.02420.951
57DAP/reference1.11380.019

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.306540.161
27DAP/17DAP0.949070.724
39DAP/27DAP1.054950.587
41DAP/39DAP1.186730.612
42DAP/41DAP1.209280.487
43DAP/42DAP0.821840.058
47DAP/43DAP0.986790.939
52DAP/47DAP1.094350.696
57DAP/52DAP1.024690.963
57DAP/7DAP0.6748

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.999970.682
17DAP/reference0.887950.072
27DAP/reference0.932340.231
39DAP/reference1.031961
41DAP/reference0.99330.619
42DAP/reference1.212951
43DAP/reference1.030170.923
47DAP/reference1.106680.468
52DAP/reference0.871530.049
57DAP/reference0.791530.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.121920.224
17DAP/reference1.11360.311
27DAP/reference1.192550.26
39DAP/reference1.231440.048
41DAP/reference1.047410.752
42DAP/reference1.035481
43DAP/reference1.059920.874
47DAP/reference1.207650.081
52DAP/reference0.923620.203
57DAP/reference0.996740.72

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.046940.588
17DAP/reference1.069720.427
27DAP/reference1.060030.425
39DAP/reference0.915950.092
41DAP/reference1.135310.411
42DAP/reference1.012951
43DAP/reference0.99450.685
47DAP/reference1.05690.966
52DAP/reference1.091950.826
57DAP/reference1.26190.157

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.175930.966
26DAP/20DAP1.13447
34DAP/26DAP1.48171
51DAP/34DAP1.333460.192
52DAP/51DAP0.82961
53DAP/52DAP1.042280.797
55DAP/53DAP0.703710.017
57DAP/55DAP1.378520.037
62DAP/57DAP0.930280.871
68DAP/62DAP0.94720.747
68DAP/14DAP1.224610.384

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.730880.122

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.117960.666
Mature Green Tomato/Ripe Tomato0.787250.2
Immature Eggplant/Mature Eggplant1.084180.267
Ripe Pepper/Ripe Tomato2.168481
Mature Eggplant/Ripe Tomato0.925871

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.95290.961
1-1-2/M820.901530.754
12-2/M820.8793
12-4/M820.81179
1-3/M820.89549
2-1-1/M820.943850.465
2-1/M82N/AN/A
2-6/M820.80716
3-2/M820.88744
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.098651
5-3/M821.077650.496
6-2/M82N/AN/A
6-3/M821.0627
7-1/M821.13813
7-2/M821.06017
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.879671
IL2-6/WTpooled1.098780.531
IL7-5/WTpooled0.63766
IL7-3/WTpooled0.89048
IL12-4/WTpooled0.981321
IL1-4/WTpooled1.073911
WT/WTpooled0.98271

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.036531

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.198440.921
DC3000/delta hrp 6h1.04811
DC3000/delta hrp 12h1.023281
DC3000/delta hrp 24h0.97290.851

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.959611
Exp 36h0.924510.879
Exp 60h0.869970.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98321
Var 0h0.496431
Var 12h I row2-row11.170821
Var 12h NI row2-row11.080380.281
Var 36h I row2-row11.14210.309
Var 36h NI row2-row10.578540.645
Var 60h I row2-row10.49061
Var 60h NI row2-row10.937881
Time course 0hI-0hNI0.934730.711
Time course 12hI-12hNI0.97750.897
Time course 36hI-36hNI1.07450.19
Time course 60hI-60hNI1.027861

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.945240.324
transgenic ySAMdc/azygous control (breaker)1.091221
transgenic ySAMdc/azygous control (red)1.105060.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.046140.495

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.969850.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.087321
Manapal/WT (break)0.959971
Manapal/WT (red)1.090150.413