Expression of 1-1-3.2.1.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12107 | 0.588 |
27DAP/17DAP | 1.1009 | 0.885 |
39DAP/27DAP | 1.28896 | 0.558 |
41DAP/39DAP | 0.91676 | 0.69 |
42DAP/41DAP | 1.19999 | 0.709 |
43DAP/42DAP | 0.96195 | 0.909 |
47DAP/43DAP | 1.29238 | 0.538 |
52DAP/47DAP | 1.24231 | 0.662 |
57DAP/52DAP | 0.91394 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14279 | 0.188 |
17DAP/reference | 1.05548 | 0.384 |
27DAP/reference | 0.98284 | 0.711 |
39DAP/reference | 1.0264 | 0.722 |
41DAP/reference | 1.05284 | 0.338 |
42DAP/reference | 1.02887 | 0.706 |
43DAP/reference | 1.15635 | 0.111 |
47DAP/reference | 1.16863 | 0.009 |
52DAP/reference | 1.0242 | 0.951 |
57DAP/reference | 1.1138 | 0.019 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.30654 | 0.161 |
27DAP/17DAP | 0.94907 | 0.724 |
39DAP/27DAP | 1.05495 | 0.587 |
41DAP/39DAP | 1.18673 | 0.612 |
42DAP/41DAP | 1.20928 | 0.487 |
43DAP/42DAP | 0.82184 | 0.058 |
47DAP/43DAP | 0.98679 | 0.939 |
52DAP/47DAP | 1.09435 | 0.696 |
57DAP/52DAP | 1.02469 | 0.963 |
57DAP/7DAP | 0.6748 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99997 | 0.682 |
17DAP/reference | 0.88795 | 0.072 |
27DAP/reference | 0.93234 | 0.231 |
39DAP/reference | 1.03196 | 1 |
41DAP/reference | 0.9933 | 0.619 |
42DAP/reference | 1.21295 | 1 |
43DAP/reference | 1.03017 | 0.923 |
47DAP/reference | 1.10668 | 0.468 |
52DAP/reference | 0.87153 | 0.049 |
57DAP/reference | 0.79153 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12192 | 0.224 |
17DAP/reference | 1.1136 | 0.311 |
27DAP/reference | 1.19255 | 0.26 |
39DAP/reference | 1.23144 | 0.048 |
41DAP/reference | 1.04741 | 0.752 |
42DAP/reference | 1.03548 | 1 |
43DAP/reference | 1.05992 | 0.874 |
47DAP/reference | 1.20765 | 0.081 |
52DAP/reference | 0.92362 | 0.203 |
57DAP/reference | 0.99674 | 0.72 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04694 | 0.588 |
17DAP/reference | 1.06972 | 0.427 |
27DAP/reference | 1.06003 | 0.425 |
39DAP/reference | 0.91595 | 0.092 |
41DAP/reference | 1.13531 | 0.411 |
42DAP/reference | 1.01295 | 1 |
43DAP/reference | 0.9945 | 0.685 |
47DAP/reference | 1.0569 | 0.966 |
52DAP/reference | 1.09195 | 0.826 |
57DAP/reference | 1.2619 | 0.157 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.17593 | 0.966 |
26DAP/20DAP | 1.13447 | |
34DAP/26DAP | 1.48171 | |
51DAP/34DAP | 1.33346 | 0.192 |
52DAP/51DAP | 0.8296 | 1 |
53DAP/52DAP | 1.04228 | 0.797 |
55DAP/53DAP | 0.70371 | 0.017 |
57DAP/55DAP | 1.37852 | 0.037 |
62DAP/57DAP | 0.93028 | 0.871 |
68DAP/62DAP | 0.9472 | 0.747 |
68DAP/14DAP | 1.22461 | 0.384 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.73088 | 0.122 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.11796 | 0.666 |
Mature Green Tomato/Ripe Tomato | 0.78725 | 0.2 |
Immature Eggplant/Mature Eggplant | 1.08418 | 0.267 |
Ripe Pepper/Ripe Tomato | 2.16848 | 1 |
Mature Eggplant/Ripe Tomato | 0.92587 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9529 | 0.961 |
1-1-2/M82 | 0.90153 | 0.754 |
12-2/M82 | 0.8793 | |
12-4/M82 | 0.81179 | |
1-3/M82 | 0.89549 | |
2-1-1/M82 | 0.94385 | 0.465 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.80716 | |
3-2/M82 | 0.88744 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.09865 | 1 |
5-3/M82 | 1.07765 | 0.496 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.0627 | |
7-1/M82 | 1.13813 | |
7-2/M82 | 1.06017 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87967 | 1 |
IL2-6/WTpooled | 1.09878 | 0.531 |
IL7-5/WTpooled | 0.63766 | |
IL7-3/WTpooled | 0.89048 | |
IL12-4/WTpooled | 0.98132 | 1 |
IL1-4/WTpooled | 1.07391 | 1 |
WT/WTpooled | 0.9827 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03653 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.19844 | 0.921 |
DC3000/delta hrp 6h | 1.0481 | 1 |
DC3000/delta hrp 12h | 1.02328 | 1 |
DC3000/delta hrp 24h | 0.9729 | 0.851 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95961 | 1 |
Exp 36h | 0.92451 | 0.879 |
Exp 60h | 0.86997 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9832 | 1 |
Var 0h | 0.49643 | 1 |
Var 12h I row2-row1 | 1.17082 | 1 |
Var 12h NI row2-row1 | 1.08038 | 0.281 |
Var 36h I row2-row1 | 1.1421 | 0.309 |
Var 36h NI row2-row1 | 0.57854 | 0.645 |
Var 60h I row2-row1 | 0.49061 | |
Var 60h NI row2-row1 | 0.93788 | 1 |
Time course 0hI-0hNI | 0.93473 | 0.711 |
Time course 12hI-12hNI | 0.9775 | 0.897 |
Time course 36hI-36hNI | 1.0745 | 0.19 |
Time course 60hI-60hNI | 1.02786 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94524 | 0.324 |
transgenic ySAMdc/azygous control (breaker) | 1.09122 | 1 |
transgenic ySAMdc/azygous control (red) | 1.10506 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04614 | 0.495 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.96985 | 0.35 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.08732 | 1 |
Manapal/WT (break) | 0.95997 | 1 |
Manapal/WT (red) | 1.09015 | 0.413 |
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