Expression of 1-1-3.2.1.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76064 | 0.419 |
27DAP/17DAP | 2.31281 | 0.263 |
39DAP/27DAP | 1.43001 | 0.606 |
41DAP/39DAP | 1.47281 | 0.459 |
42DAP/41DAP | 0.9869 | 1 |
43DAP/42DAP | 0.92396 | 0.883 |
47DAP/43DAP | 1.03119 | 0.828 |
52DAP/47DAP | 1.15143 | 0.736 |
57DAP/52DAP | 0.98419 | 0.963 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99496 | 0.806 |
17DAP/reference | 0.48147 | |
27DAP/reference | N/A | N/A |
39DAP/reference | 0.50299 | |
41DAP/reference | 1.17038 | 0.102 |
42DAP/reference | 0.99056 | 0.517 |
43DAP/reference | 1.18653 | 0.596 |
47DAP/reference | 1.34679 | 0.773 |
52DAP/reference | 0.65263 | |
57DAP/reference | 0.88662 | 0.131 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92474 | 0.595 |
27DAP/17DAP | 0.83098 | 0.58 |
39DAP/27DAP | 1.57403 | 0.262 |
41DAP/39DAP | 1.26766 | 0.531 |
42DAP/41DAP | 1.64176 | 0.134 |
43DAP/42DAP | 1.35977 | 1 |
47DAP/43DAP | 1.19571 | 1 |
52DAP/47DAP | 1.16998 | 0.819 |
57DAP/52DAP | 1.35414 | 0.714 |
57DAP/7DAP | 1.60031 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99771 | 0.682 |
17DAP/reference | 1.52924 | 0.011 |
27DAP/reference | 1.61315 | 0.011 |
39DAP/reference | 2.25738 | 0.005 |
41DAP/reference | 2.20397 | 0.008 |
42DAP/reference | 2.23036 | 0.007 |
43DAP/reference | 2.06904 | 0.007 |
47DAP/reference | 1.49548 | 0.247 |
52DAP/reference | 1.78007 | 0.007 |
57DAP/reference | 1.99917 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.66511 | 0.041 |
17DAP/reference | 0.8149 | |
27DAP/reference | 0.63171 | 0.257 |
39DAP/reference | N/A | N/A |
41DAP/reference | 0.67447 | |
42DAP/reference | N/A | N/A |
43DAP/reference | 0.98678 | 0.787 |
47DAP/reference | 1.18176 | 0.603 |
52DAP/reference | 0.66827 | 0.259 |
57DAP/reference | 1.14024 | 0.957 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34436 | 0.035 |
17DAP/reference | 1.4684 | 0.17 |
27DAP/reference | 1.47927 | 0.021 |
39DAP/reference | 1.30471 | 0.052 |
41DAP/reference | 1.55278 | 0.017 |
42DAP/reference | 1.29036 | 0.045 |
43DAP/reference | 1.32551 | 0.069 |
47DAP/reference | 0.72983 | |
52DAP/reference | 2.02295 | 0.039 |
57DAP/reference | 1.71386 | 0.814 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.63611 | 0.159 |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | 0.91637 | 0.97 |
51DAP/34DAP | 0.77065 | |
52DAP/51DAP | 0.79772 | |
53DAP/52DAP | 2.03733 | 0.806 |
55DAP/53DAP | 1.04907 | 0.864 |
57DAP/55DAP | 0.54538 | |
62DAP/57DAP | 1.55475 | 0.833 |
68DAP/62DAP | 1.32728 | |
68DAP/14DAP | 0.94734 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.60624 | |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.96028 | 1 |
IL2-6/WTpooled | 0.78819 | 0.473 |
IL7-5/WTpooled | 1.27116 | 0.792 |
IL7-3/WTpooled | 0.94859 | 1 |
IL12-4/WTpooled | 0.86202 | 0.71 |
IL1-4/WTpooled | 0.98477 | 0.834 |
WT/WTpooled | 1.05189 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.96314 | 1 |
Manapal/WT (red) | N/A | N/A |
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