Expression of 1-1-3.2.1.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.760640.419
27DAP/17DAP2.312810.263
39DAP/27DAP1.430010.606
41DAP/39DAP1.472810.459
42DAP/41DAP0.98691
43DAP/42DAP0.923960.883
47DAP/43DAP1.031190.828
52DAP/47DAP1.151430.736
57DAP/52DAP0.984190.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.994960.806
17DAP/reference0.48147
27DAP/referenceN/AN/A
39DAP/reference0.50299
41DAP/reference1.170380.102
42DAP/reference0.990560.517
43DAP/reference1.186530.596
47DAP/reference1.346790.773
52DAP/reference0.65263
57DAP/reference0.886620.131

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.924740.595
27DAP/17DAP0.830980.58
39DAP/27DAP1.574030.262
41DAP/39DAP1.267660.531
42DAP/41DAP1.641760.134
43DAP/42DAP1.359771
47DAP/43DAP1.195711
52DAP/47DAP1.169980.819
57DAP/52DAP1.354140.714
57DAP/7DAP1.60031

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.997710.682
17DAP/reference1.529240.011
27DAP/reference1.613150.011
39DAP/reference2.257380.005
41DAP/reference2.203970.008
42DAP/reference2.230360.007
43DAP/reference2.069040.007
47DAP/reference1.495480.247
52DAP/reference1.780070.007
57DAP/reference1.999170.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.665110.041
17DAP/reference0.8149
27DAP/reference0.631710.257
39DAP/referenceN/AN/A
41DAP/reference0.67447
42DAP/referenceN/AN/A
43DAP/reference0.986780.787
47DAP/reference1.181760.603
52DAP/reference0.668270.259
57DAP/reference1.140240.957

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.344360.035
17DAP/reference1.46840.17
27DAP/reference1.479270.021
39DAP/reference1.304710.052
41DAP/reference1.552780.017
42DAP/reference1.290360.045
43DAP/reference1.325510.069
47DAP/reference0.72983
52DAP/reference2.022950.039
57DAP/reference1.713860.814

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.636110.159
26DAP/20DAPN/AN/A
34DAP/26DAP0.916370.97
51DAP/34DAP0.77065
52DAP/51DAP0.79772
53DAP/52DAP2.037330.806
55DAP/53DAP1.049070.864
57DAP/55DAP0.54538
62DAP/57DAP1.554750.833
68DAP/62DAP1.32728
68DAP/14DAP0.947341

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.60624

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.960281
IL2-6/WTpooled0.788190.473
IL7-5/WTpooled1.271160.792
IL7-3/WTpooled0.948591
IL12-4/WTpooled0.862020.71
IL1-4/WTpooled0.984770.834
WT/WTpooled1.051891

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.963141
Manapal/WT (red)N/AN/A