Tomato Functional Genomics Database (TFGD)

Expression of 1-1-3.2.1.2

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.76064	0.419
27DAP/17DAP	2.31281	0.263
39DAP/27DAP	1.43001	0.606
41DAP/39DAP	1.47281	0.459
42DAP/41DAP	0.9869	1
43DAP/42DAP	0.92396	0.883
47DAP/43DAP	1.03119	0.828
52DAP/47DAP	1.15143	0.736
57DAP/52DAP	0.98419	0.963

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99496	0.806
17DAP/reference	0.48147
27DAP/reference	N/A	N/A
39DAP/reference	0.50299
41DAP/reference	1.17038	0.102
42DAP/reference	0.99056	0.517
43DAP/reference	1.18653	0.596
47DAP/reference	1.34679	0.773
52DAP/reference	0.65263
57DAP/reference	0.88662	0.131

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.92474	0.595
27DAP/17DAP	0.83098	0.58
39DAP/27DAP	1.57403	0.262
41DAP/39DAP	1.26766	0.531
42DAP/41DAP	1.64176	0.134
43DAP/42DAP	1.35977	1
47DAP/43DAP	1.19571	1
52DAP/47DAP	1.16998	0.819
57DAP/52DAP	1.35414	0.714
57DAP/7DAP	1.60031

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99771	0.682
17DAP/reference	1.52924	0.011
27DAP/reference	1.61315	0.011
39DAP/reference	2.25738	0.005
41DAP/reference	2.20397	0.008
42DAP/reference	2.23036	0.007
43DAP/reference	2.06904	0.007
47DAP/reference	1.49548	0.247
52DAP/reference	1.78007	0.007
57DAP/reference	1.99917	0.004

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.66511	0.041
17DAP/reference	0.8149
27DAP/reference	0.63171	0.257
39DAP/reference	N/A	N/A
41DAP/reference	0.67447
42DAP/reference	N/A	N/A
43DAP/reference	0.98678	0.787
47DAP/reference	1.18176	0.603
52DAP/reference	0.66827	0.259
57DAP/reference	1.14024	0.957

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.34436	0.035
17DAP/reference	1.4684	0.17
27DAP/reference	1.47927	0.021
39DAP/reference	1.30471	0.052
41DAP/reference	1.55278	0.017
42DAP/reference	1.29036	0.045
43DAP/reference	1.32551	0.069
47DAP/reference	0.72983
52DAP/reference	2.02295	0.039
57DAP/reference	1.71386	0.814

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.63611	0.159
26DAP/20DAP	N/A	N/A
34DAP/26DAP	0.91637	0.97
51DAP/34DAP	0.77065
52DAP/51DAP	0.79772
53DAP/52DAP	2.03733	0.806
55DAP/53DAP	1.04907	0.864
57DAP/55DAP	0.54538
62DAP/57DAP	1.55475	0.833
68DAP/62DAP	1.32728
68DAP/14DAP	0.94734	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.60624

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.96028	1
IL2-6/WTpooled	0.78819	0.473
IL7-5/WTpooled	1.27116	0.792
IL7-3/WTpooled	0.94859	1
IL12-4/WTpooled	0.86202	0.71
IL1-4/WTpooled	0.98477	0.834
WT/WTpooled	1.05189	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	0.96314	1
Manapal/WT (red)	N/A	N/A