Expression of 1-1-3.2.10.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88982 | 0.496 |
27DAP/17DAP | 0.68724 | 0.102 |
39DAP/27DAP | 0.9007 | 0.583 |
41DAP/39DAP | 0.68405 | 0.113 |
42DAP/41DAP | 0.92543 | 1 |
43DAP/42DAP | 1.01494 | 0.94 |
47DAP/43DAP | 1.06323 | 0.442 |
52DAP/47DAP | 0.9693 | 0.81 |
57DAP/52DAP | 0.86414 | 0.622 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18818 | 0.11 |
17DAP/reference | 0.81299 | 0.033 |
27DAP/reference | 0.92121 | 0.385 |
39DAP/reference | 0.78386 | 0.028 |
41DAP/reference | 0.72978 | 0.011 |
42DAP/reference | 1.01428 | 1 |
43DAP/reference | 0.8246 | 0.047 |
47DAP/reference | 0.96314 | 0.322 |
52DAP/reference | 1.14099 | 0.272 |
57DAP/reference | 1.04107 | 0.662 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99367 | 0.801 |
27DAP/17DAP | 1.02909 | 0.957 |
39DAP/27DAP | 0.80992 | 0.274 |
41DAP/39DAP | 1.25803 | 0.801 |
42DAP/41DAP | 0.96906 | 0.721 |
43DAP/42DAP | 0.92758 | 0.576 |
47DAP/43DAP | 0.93557 | 0.617 |
52DAP/47DAP | 0.96395 | 0.876 |
57DAP/52DAP | 0.90701 | 0.628 |
57DAP/7DAP | 0.77226 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.6147 | 0.027 |
17DAP/reference | 1.4988 | 0.006 |
27DAP/reference | 1.13627 | 0.107 |
39DAP/reference | 1.08544 | 0.101 |
41DAP/reference | 1.06884 | 0.43 |
42DAP/reference | 1.07862 | 0.405 |
43DAP/reference | 1.20872 | 0.099 |
47DAP/reference | 1.00531 | 1 |
52DAP/reference | 1.033 | 0.941 |
57DAP/reference | 0.92433 | 0.162 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01616 | 0.951 |
17DAP/reference | 0.915 | 0.239 |
27DAP/reference | 1.16858 | 0.359 |
39DAP/reference | 1.04898 | 1 |
41DAP/reference | 1.07418 | 1 |
42DAP/reference | 1.08264 | 0.583 |
43DAP/reference | 0.71852 | 0.031 |
47DAP/reference | 0.87605 | 0.12 |
52DAP/reference | 0.76613 | 0.008 |
57DAP/reference | 0.63687 | 0.021 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.18461 | 0.019 |
17DAP/reference | 1.0405 | 0.932 |
27DAP/reference | 1.07958 | 0.227 |
39DAP/reference | 1.38189 | 0.069 |
41DAP/reference | 1.0691 | 0.383 |
42DAP/reference | 1.24014 | 0.239 |
43DAP/reference | 1.37679 | 0.038 |
47DAP/reference | 1.06453 | 0.731 |
52DAP/reference | 0.966 | 0.637 |
57DAP/reference | 1.59382 | 0.029 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02778 | |
26DAP/20DAP | 1.16005 | 0.421 |
34DAP/26DAP | 0.97848 | 0.944 |
51DAP/34DAP | 1.10775 | 0.654 |
52DAP/51DAP | 1.00826 | 1 |
53DAP/52DAP | 1.07174 | 0.783 |
55DAP/53DAP | 1.02644 | 0.948 |
57DAP/55DAP | 0.93389 | 0.694 |
62DAP/57DAP | 0.96897 | 0.994 |
68DAP/62DAP | 1.29657 | 0.353 |
68DAP/14DAP | 1.68779 | 0.03 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.289 | 0.057 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.30196 | 0.666 |
Mature Green Tomato/Ripe Tomato | 1.94674 | 0.149 |
Immature Eggplant/Mature Eggplant | 1.75781 | 0.055 |
Ripe Pepper/Ripe Tomato | 3.27275 | 1 |
Mature Eggplant/Ripe Tomato | 13.0563 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.76568 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.12435 | 0.673 |
IL1-4/WTpooled | 1.1166 | 1 |
WT/WTpooled | 1.01199 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.90659 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.85355 | 0.941 |
DC3000/delta hrp 6h | 1.09355 | 1 |
DC3000/delta hrp 12h | 1.07458 | 1 |
DC3000/delta hrp 24h | 0.84897 | 0.119 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.73542 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.71713 | 0.027 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.807 | 1 |
Exp 36h | 0.92386 | 0.82 |
Exp 60h | 0.71399 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00356 | 1 |
Var 0h | 0.54444 | 1 |
Var 12h I row2-row1 | 0.7326 | 0.338 |
Var 12h NI row2-row1 | 0.96629 | 0.82 |
Var 36h I row2-row1 | 0.91138 | 1 |
Var 36h NI row2-row1 | 0.9996 | 1 |
Var 60h I row2-row1 | 0.92898 | 0.439 |
Var 60h NI row2-row1 | 1.00425 | 1 |
Time course 0hI-0hNI | 0.96621 | 0.845 |
Time course 12hI-12hNI | 1.00429 | 1 |
Time course 36hI-36hNI | 1.02707 | 0.799 |
Time course 60hI-60hNI | 0.52306 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05725 | 0.612 |
transgenic ySAMdc/azygous control (breaker) | 0.99518 | 1 |
transgenic ySAMdc/azygous control (red) | 0.94623 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96749 | 0.112 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.26389 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.18839 | 0.093 |
Manapal/WT (break) | 1.5986 | 0.13 |
Manapal/WT (red) | 2.41397 | 0.133 |
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