Expression of 1-1-3.2.10.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.30610.359
27DAP/17DAP1.065760.874
39DAP/27DAP1.579540.17
41DAP/39DAP0.993140.905
42DAP/41DAP1.277140.672
43DAP/42DAP1.117660.976
47DAP/43DAP1.272130.469
52DAP/47DAP0.975170.873
57DAP/52DAP1.011580.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.03580.846
17DAP/reference0.848030.026
27DAP/reference0.925960.194
39DAP/reference0.847840.047
41DAP/reference0.796010.009
42DAP/reference0.999290.547
43DAP/reference0.883710.056
47DAP/reference0.950810.127
52DAP/reference1.119380.354
57DAP/reference1.132760.091

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.967990.56
27DAP/17DAP0.964590.821
39DAP/27DAP1.114990.324
41DAP/39DAP1.016970.837
42DAP/41DAP0.949880.556
43DAP/42DAP1.104260.162
47DAP/43DAP1.102290.3
52DAP/47DAP0.969040.9
57DAP/52DAP0.884820.315
57DAP/7DAP1.271391

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.359220.055
17DAP/reference0.973110.447
27DAP/reference1.28880.197
39DAP/reference1.219290.166
41DAP/reference1.08230.864
42DAP/reference1.559870.014
43DAP/reference2.229680.008
47DAP/reference1.511930.028
52DAP/reference2.154090.011
57DAP/reference1.661930.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.007920.831
17DAP/reference0.929890.102
27DAP/reference1.103630.359
39DAP/reference1.273150.182
41DAP/reference1.254410.285
42DAP/reference1.24420.19
43DAP/reference0.910750.352
47DAP/reference1.091560.343
52DAP/reference1.026451
57DAP/reference0.785320.035

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.637030.036
17DAP/reference1.076660.956
27DAP/reference1.299340.057
39DAP/reference1.046890.792
41DAP/reference1.001030.826
42DAP/reference1.338550.084
43DAP/reference1.265710.1
47DAP/reference1.045541
52DAP/reference1.13320.558
57DAP/reference1.735050.006

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.156610.966
26DAP/20DAP1.04440.818
34DAP/26DAP0.958670.841
51DAP/34DAP1.234860.108
52DAP/51DAP0.965571
53DAP/52DAP1.121750.23
55DAP/53DAP0.9590.698
57DAP/55DAP0.960310.795
62DAP/57DAP1.217410.8
68DAP/62DAP1.001320.939
68DAP/14DAP1.184260.785

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.064890.663

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.185240.058
Mature Green Tomato/Ripe Tomato0.910770.411
Immature Eggplant/Mature Eggplant0.699360.082
Ripe Pepper/Ripe Tomato0.732010.293
Mature Eggplant/Ripe Tomato0.86361

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.965430.961
1-1-2/M821.05574
12-2/M820.79095
12-4/M821.213751
1-3/M821.25226
2-1-1/M820.79277
2-1/M82N/AN/A
2-6/M821.16007
3-2/M821.12274
4-1-1/M82N/AN/A
4-1/M821.47930.853
4-3-2/M821.266560.241
4-3/M821.241530.268
5-3/M820.380150.395
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.18258
7-2/M82N/AN/A
9-3-2/M821.60961

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.185750.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.336290.294
IL12-4/WTpooled0.653050.543
IL1-4/WTpooled1.519091
WT/WTpooled1.004841

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.987331

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.941331
DC3000/delta hrp 6h1.169961
DC3000/delta hrp 12h1.207561
DC3000/delta hrp 24h2.631490.027

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB2.841890.038
DC3000 delta B/DC3000 delta AB2.301550.047

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.080231
Exp 36h1.006871
Exp 60h0.97680.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002681
Var 0h0.978891
Var 12h I row2-row10.798070.338
Var 12h NI row2-row10.885490.627
Var 36h I row2-row11.042980.908
Var 36h NI row2-row11.021041
Var 60h I row2-row10.973530.832
Var 60h NI row2-row11.075140.904
Time course 0hI-0hNI1.00421
Time course 12hI-12hNI1.020880.82
Time course 36hI-36hNI1.028910.722
Time course 60hI-60hNI0.949070.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.968790.306
transgenic ySAMdc/azygous control (breaker)1.017321
transgenic ySAMdc/azygous control (red)0.998351

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.976510.534

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.511420.228

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.613430.084
Manapal/WT (break)1.481570.123
Manapal/WT (red)1.147560.413