Expression of 1-1-3.2.10.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.3061 | 0.359 |
27DAP/17DAP | 1.06576 | 0.874 |
39DAP/27DAP | 1.57954 | 0.17 |
41DAP/39DAP | 0.99314 | 0.905 |
42DAP/41DAP | 1.27714 | 0.672 |
43DAP/42DAP | 1.11766 | 0.976 |
47DAP/43DAP | 1.27213 | 0.469 |
52DAP/47DAP | 0.97517 | 0.873 |
57DAP/52DAP | 1.01158 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0358 | 0.846 |
17DAP/reference | 0.84803 | 0.026 |
27DAP/reference | 0.92596 | 0.194 |
39DAP/reference | 0.84784 | 0.047 |
41DAP/reference | 0.79601 | 0.009 |
42DAP/reference | 0.99929 | 0.547 |
43DAP/reference | 0.88371 | 0.056 |
47DAP/reference | 0.95081 | 0.127 |
52DAP/reference | 1.11938 | 0.354 |
57DAP/reference | 1.13276 | 0.091 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96799 | 0.56 |
27DAP/17DAP | 0.96459 | 0.821 |
39DAP/27DAP | 1.11499 | 0.324 |
41DAP/39DAP | 1.01697 | 0.837 |
42DAP/41DAP | 0.94988 | 0.556 |
43DAP/42DAP | 1.10426 | 0.162 |
47DAP/43DAP | 1.10229 | 0.3 |
52DAP/47DAP | 0.96904 | 0.9 |
57DAP/52DAP | 0.88482 | 0.315 |
57DAP/7DAP | 1.27139 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35922 | 0.055 |
17DAP/reference | 0.97311 | 0.447 |
27DAP/reference | 1.2888 | 0.197 |
39DAP/reference | 1.21929 | 0.166 |
41DAP/reference | 1.0823 | 0.864 |
42DAP/reference | 1.55987 | 0.014 |
43DAP/reference | 2.22968 | 0.008 |
47DAP/reference | 1.51193 | 0.028 |
52DAP/reference | 2.15409 | 0.011 |
57DAP/reference | 1.66193 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00792 | 0.831 |
17DAP/reference | 0.92989 | 0.102 |
27DAP/reference | 1.10363 | 0.359 |
39DAP/reference | 1.27315 | 0.182 |
41DAP/reference | 1.25441 | 0.285 |
42DAP/reference | 1.2442 | 0.19 |
43DAP/reference | 0.91075 | 0.352 |
47DAP/reference | 1.09156 | 0.343 |
52DAP/reference | 1.02645 | 1 |
57DAP/reference | 0.78532 | 0.035 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.63703 | 0.036 |
17DAP/reference | 1.07666 | 0.956 |
27DAP/reference | 1.29934 | 0.057 |
39DAP/reference | 1.04689 | 0.792 |
41DAP/reference | 1.00103 | 0.826 |
42DAP/reference | 1.33855 | 0.084 |
43DAP/reference | 1.26571 | 0.1 |
47DAP/reference | 1.04554 | 1 |
52DAP/reference | 1.1332 | 0.558 |
57DAP/reference | 1.73505 | 0.006 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.15661 | 0.966 |
26DAP/20DAP | 1.0444 | 0.818 |
34DAP/26DAP | 0.95867 | 0.841 |
51DAP/34DAP | 1.23486 | 0.108 |
52DAP/51DAP | 0.96557 | 1 |
53DAP/52DAP | 1.12175 | 0.23 |
55DAP/53DAP | 0.959 | 0.698 |
57DAP/55DAP | 0.96031 | 0.795 |
62DAP/57DAP | 1.21741 | 0.8 |
68DAP/62DAP | 1.00132 | 0.939 |
68DAP/14DAP | 1.18426 | 0.785 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.06489 | 0.663 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.18524 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.91077 | 0.411 |
Immature Eggplant/Mature Eggplant | 0.69936 | 0.082 |
Ripe Pepper/Ripe Tomato | 0.73201 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.8636 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96543 | 0.961 |
1-1-2/M82 | 1.05574 | |
12-2/M82 | 0.79095 | |
12-4/M82 | 1.21375 | 1 |
1-3/M82 | 1.25226 | |
2-1-1/M82 | 0.79277 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.16007 | |
3-2/M82 | 1.12274 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.4793 | 0.853 |
4-3-2/M82 | 1.26656 | 0.241 |
4-3/M82 | 1.24153 | 0.268 |
5-3/M82 | 0.38015 | 0.395 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.18258 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.6096 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.18575 | 0.788 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.33629 | 0.294 |
IL12-4/WTpooled | 0.65305 | 0.543 |
IL1-4/WTpooled | 1.51909 | 1 |
WT/WTpooled | 1.00484 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98733 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94133 | 1 |
DC3000/delta hrp 6h | 1.16996 | 1 |
DC3000/delta hrp 12h | 1.20756 | 1 |
DC3000/delta hrp 24h | 2.63149 | 0.027 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 2.84189 | 0.038 |
DC3000 delta B/DC3000 delta AB | 2.30155 | 0.047 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.08023 | 1 |
Exp 36h | 1.00687 | 1 |
Exp 60h | 0.9768 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00268 | 1 |
Var 0h | 0.97889 | 1 |
Var 12h I row2-row1 | 0.79807 | 0.338 |
Var 12h NI row2-row1 | 0.88549 | 0.627 |
Var 36h I row2-row1 | 1.04298 | 0.908 |
Var 36h NI row2-row1 | 1.02104 | 1 |
Var 60h I row2-row1 | 0.97353 | 0.832 |
Var 60h NI row2-row1 | 1.07514 | 0.904 |
Time course 0hI-0hNI | 1.0042 | 1 |
Time course 12hI-12hNI | 1.02088 | 0.82 |
Time course 36hI-36hNI | 1.02891 | 0.722 |
Time course 60hI-60hNI | 0.94907 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96879 | 0.306 |
transgenic ySAMdc/azygous control (breaker) | 1.01732 | 1 |
transgenic ySAMdc/azygous control (red) | 0.99835 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97651 | 0.534 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.51142 | 0.228 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.61343 | 0.084 |
Manapal/WT (break) | 1.48157 | 0.123 |
Manapal/WT (red) | 1.14756 | 0.413 |
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