Expression of 1-1-3.2.11.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00848 | 0.788 |
27DAP/17DAP | 1.84797 | 0.575 |
39DAP/27DAP | 0.68647 | 0.378 |
41DAP/39DAP | 1.14238 | 0.504 |
42DAP/41DAP | 1.19132 | 0.856 |
43DAP/42DAP | 1.11195 | 1 |
47DAP/43DAP | 0.89892 | 0.645 |
52DAP/47DAP | 1.99649 | 0.216 |
57DAP/52DAP | 1.0914 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10434 | 0.846 |
17DAP/reference | 1.15738 | 0.035 |
27DAP/reference | 1.07806 | 0.15 |
39DAP/reference | 1.13206 | 0.311 |
41DAP/reference | 1.1161 | 0.122 |
42DAP/reference | 0.97484 | 0.337 |
43DAP/reference | 1.05141 | 0.445 |
47DAP/reference | 0.9378 | 0.116 |
52DAP/reference | 0.95311 | 0.382 |
57DAP/reference | 0.82813 | 0.059 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12938 | 0.899 |
27DAP/17DAP | 0.92892 | 0.418 |
39DAP/27DAP | 1.21975 | 0.2 |
41DAP/39DAP | 1.51315 | 0.315 |
42DAP/41DAP | 0.8542 | 0.211 |
43DAP/42DAP | 1.21906 | 0.028 |
47DAP/43DAP | 1.10524 | 0.492 |
52DAP/47DAP | 1.53511 | 0.142 |
57DAP/52DAP | 2.29778 | 0.032 |
57DAP/7DAP | 1.77038 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83236 | 0.077 |
17DAP/reference | 1.01586 | 1 |
27DAP/reference | 1.12665 | 0.197 |
39DAP/reference | 1.01901 | 1 |
41DAP/reference | 1.05031 | 0.701 |
42DAP/reference | 0.86244 | 0.038 |
43DAP/reference | 1.10199 | 0.079 |
47DAP/reference | 1.02772 | 1 |
52DAP/reference | 1.042 | 0.781 |
57DAP/reference | 1.12884 | 0.17 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12984 | 0.284 |
17DAP/reference | 1.21898 | 0.013 |
27DAP/reference | 0.89804 | 0.167 |
39DAP/reference | 0.89928 | 0.144 |
41DAP/reference | 1.04634 | 1 |
42DAP/reference | 0.8334 | 0.035 |
43DAP/reference | 0.97952 | 0.62 |
47DAP/reference | 1.05472 | 0.603 |
52DAP/reference | 0.91849 | 0.111 |
57DAP/reference | 1.16572 | 0.244 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13929 | 0.356 |
17DAP/reference | 1.03973 | 0.887 |
27DAP/reference | 1.17598 | 0.237 |
39DAP/reference | 1.03744 | 0.912 |
41DAP/reference | 1.07678 | 0.777 |
42DAP/reference | 1.03795 | 1 |
43DAP/reference | 1.08409 | 0.7 |
47DAP/reference | 1.06424 | 0.585 |
52DAP/reference | 1.16851 | 0.312 |
57DAP/reference | 1.00659 | 0.765 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07112 | 0.966 |
26DAP/20DAP | 1.16894 | 0.53 |
34DAP/26DAP | 1.14026 | 0.819 |
51DAP/34DAP | 0.76283 | 0.138 |
52DAP/51DAP | 0.8423 | 1 |
53DAP/52DAP | 1.03426 | 1 |
55DAP/53DAP | 1.47426 | 0.434 |
57DAP/55DAP | 1.13214 | 0.841 |
62DAP/57DAP | 0.7688 | 0.088 |
68DAP/62DAP | 0.80879 | 0.429 |
68DAP/14DAP | 0.4638 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.86122 | 0.017 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.11883 | 0.024 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.09069 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.33833 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.78136 | |
1-1-2/M82 | 0.86054 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.00367 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.10694 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.85329 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.58009 | |
4-3/M82 | 0.91646 | 1 |
5-3/M82 | 1.05554 | |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.95921 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.24251 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.11561 | 1 |
IL2-6/WTpooled | 1.01117 | 1 |
IL7-5/WTpooled | 0.60641 | |
IL7-3/WTpooled | 0.94094 | 1 |
IL12-4/WTpooled | 1.1663 | 0.538 |
IL1-4/WTpooled | 1.23234 | 1 |
WT/WTpooled | 1.06281 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05386 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.86138 | 1 |
DC3000/delta hrp 6h | 0.90837 | 0.95 |
DC3000/delta hrp 12h | 1.10421 | 1 |
DC3000/delta hrp 24h | 1.32026 | 0.553 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.18233 | 0.336 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9731 | 1 |
Var 0h | 1.20492 | 0.594 |
Var 12h I row2-row1 | 1.03266 | 0.795 |
Var 12h NI row2-row1 | 1.08625 | 0.235 |
Var 36h I row2-row1 | 1.13012 | 0.283 |
Var 36h NI row2-row1 | 0.79875 | 0.522 |
Var 60h I row2-row1 | 0.88292 | 0.439 |
Var 60h NI row2-row1 | 0.75715 | 1 |
Time course 0hI-0hNI | 1.01856 | 0.852 |
Time course 12hI-12hNI | 0.97679 | 0.705 |
Time course 36hI-36hNI | 1.24633 | 0.006 |
Time course 60hI-60hNI | 1.75669 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.40433 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 0.67131 | 0.131 |
transgenic ySAMdc/azygous control (red) | 1.1586 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96943 | 0.112 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.41401 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0013 | 1 |
Manapal/WT (break) | 0.68613 | 0.333 |
Manapal/WT (red) | 0.80962 | 0.181 |
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