Expression of 1-1-3.2.11.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.008480.788
27DAP/17DAP1.847970.575
39DAP/27DAP0.686470.378
41DAP/39DAP1.142380.504
42DAP/41DAP1.191320.856
43DAP/42DAP1.111951
47DAP/43DAP0.898920.645
52DAP/47DAP1.996490.216
57DAP/52DAP1.09140.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.104340.846
17DAP/reference1.157380.035
27DAP/reference1.078060.15
39DAP/reference1.132060.311
41DAP/reference1.11610.122
42DAP/reference0.974840.337
43DAP/reference1.051410.445
47DAP/reference0.93780.116
52DAP/reference0.953110.382
57DAP/reference0.828130.059

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.129380.899
27DAP/17DAP0.928920.418
39DAP/27DAP1.219750.2
41DAP/39DAP1.513150.315
42DAP/41DAP0.85420.211
43DAP/42DAP1.219060.028
47DAP/43DAP1.105240.492
52DAP/47DAP1.535110.142
57DAP/52DAP2.297780.032
57DAP/7DAP1.770380.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.832360.077
17DAP/reference1.015861
27DAP/reference1.126650.197
39DAP/reference1.019011
41DAP/reference1.050310.701
42DAP/reference0.862440.038
43DAP/reference1.101990.079
47DAP/reference1.027721
52DAP/reference1.0420.781
57DAP/reference1.128840.17

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.129840.284
17DAP/reference1.218980.013
27DAP/reference0.898040.167
39DAP/reference0.899280.144
41DAP/reference1.046341
42DAP/reference0.83340.035
43DAP/reference0.979520.62
47DAP/reference1.054720.603
52DAP/reference0.918490.111
57DAP/reference1.165720.244

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.139290.356
17DAP/reference1.039730.887
27DAP/reference1.175980.237
39DAP/reference1.037440.912
41DAP/reference1.076780.777
42DAP/reference1.037951
43DAP/reference1.084090.7
47DAP/reference1.064240.585
52DAP/reference1.168510.312
57DAP/reference1.006590.765

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.071120.966
26DAP/20DAP1.168940.53
34DAP/26DAP1.140260.819
51DAP/34DAP0.762830.138
52DAP/51DAP0.84231
53DAP/52DAP1.034261
55DAP/53DAP1.474260.434
57DAP/55DAP1.132140.841
62DAP/57DAP0.76880.088
68DAP/62DAP0.808790.429
68DAP/14DAP0.46380.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.861220.017

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.118830.024
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.090690.224
Mature Eggplant/Ripe Tomato0.338330.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.78136
1-1-2/M820.86054
12-2/M82N/AN/A
12-4/M821.003671
1-3/M82N/AN/A
2-1-1/M821.10694
2-1/M82N/AN/A
2-6/M820.85329
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.58009
4-3/M820.916461
5-3/M821.05554
6-2/M82N/AN/A
6-3/M820.95921
7-1/M82N/AN/A
7-2/M821.24251
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.115611
IL2-6/WTpooled1.011171
IL7-5/WTpooled0.60641
IL7-3/WTpooled0.940941
IL12-4/WTpooled1.16630.538
IL1-4/WTpooled1.232341
WT/WTpooled1.062811

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.053860.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.861381
DC3000/delta hrp 6h0.908370.95
DC3000/delta hrp 12h1.104211
DC3000/delta hrp 24h1.320260.553

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.182330.336

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.97311
Var 0h1.204920.594
Var 12h I row2-row11.032660.795
Var 12h NI row2-row11.086250.235
Var 36h I row2-row11.130120.283
Var 36h NI row2-row10.798750.522
Var 60h I row2-row10.882920.439
Var 60h NI row2-row10.757151
Time course 0hI-0hNI1.018560.852
Time course 12hI-12hNI0.976790.705
Time course 36hI-36hNI1.246330.006
Time course 60hI-60hNI1.756690.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.404330.408
transgenic ySAMdc/azygous control (breaker)0.671310.131
transgenic ySAMdc/azygous control (red)1.15860.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.969430.112

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.414010.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.00131
Manapal/WT (break)0.686130.333
Manapal/WT (red)0.809620.181