Expression of 1-1-3.2.13.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00976 | 1 |
27DAP/17DAP | 1.02545 | 0.91 |
39DAP/27DAP | 0.92153 | 0.631 |
41DAP/39DAP | 0.95065 | 0.772 |
42DAP/41DAP | 0.97237 | 1 |
43DAP/42DAP | 1.04574 | 1 |
47DAP/43DAP | 1.15932 | 0.463 |
52DAP/47DAP | 0.92364 | 0.769 |
57DAP/52DAP | 1.02735 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97654 | 0.455 |
17DAP/reference | 1.04491 | 0.096 |
27DAP/reference | 0.99811 | 0.885 |
39DAP/reference | 1.11775 | 0.214 |
41DAP/reference | 1.01864 | 0.624 |
42DAP/reference | 0.96765 | 0.157 |
43DAP/reference | 1.01689 | 0.812 |
47DAP/reference | 1.03634 | 0.306 |
52DAP/reference | 0.93419 | 0.23 |
57DAP/reference | 1.03634 | 0.548 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93695 | 0.238 |
27DAP/17DAP | 0.99788 | 0.969 |
39DAP/27DAP | 1.05097 | 0.663 |
41DAP/39DAP | 1.06027 | 0.801 |
42DAP/41DAP | 1.02126 | 1 |
43DAP/42DAP | 1.01246 | 0.746 |
47DAP/43DAP | 1.00963 | 0.957 |
52DAP/47DAP | 0.99096 | 0.935 |
57DAP/52DAP | 1.0297 | 0.864 |
57DAP/7DAP | 0.91216 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85412 | 0.074 |
17DAP/reference | 0.8816 | 0.012 |
27DAP/reference | 0.87479 | 0.028 |
39DAP/reference | 0.87484 | 0.02 |
41DAP/reference | 0.84383 | 0.032 |
42DAP/reference | 0.92244 | 0.117 |
43DAP/reference | 0.80487 | 0.013 |
47DAP/reference | 0.8808 | 0.03 |
52DAP/reference | 0.83575 | 0.012 |
57DAP/reference | 0.86129 | 0.011 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99858 | 0.951 |
17DAP/reference | 0.99663 | 0.786 |
27DAP/reference | 0.95249 | 0.34 |
39DAP/reference | 0.96188 | 0.265 |
41DAP/reference | 1.00991 | 1 |
42DAP/reference | 1.04849 | 0.583 |
43DAP/reference | 1.05084 | 0.466 |
47DAP/reference | 1.06853 | 0.247 |
52DAP/reference | 0.9958 | 0.666 |
57DAP/reference | 1.07035 | 0.116 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95688 | 0.422 |
17DAP/reference | 0.97856 | 0.592 |
27DAP/reference | 0.87243 | 0.065 |
39DAP/reference | 0.85729 | 0.033 |
41DAP/reference | 0.85696 | 0.019 |
42DAP/reference | 0.84433 | 0.025 |
43DAP/reference | 0.85558 | 0.023 |
47DAP/reference | 1.0044 | 0.731 |
52DAP/reference | 0.79993 | 0.164 |
57DAP/reference | 0.87082 | 0.127 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93149 | 0.708 |
26DAP/20DAP | 0.94051 | 0.512 |
34DAP/26DAP | 1.08253 | 1 |
51DAP/34DAP | 0.88911 | 0.217 |
52DAP/51DAP | 0.96489 | 1 |
53DAP/52DAP | 1.00964 | 1 |
55DAP/53DAP | 1.04557 | 0.748 |
57DAP/55DAP | 1.12906 | 0.461 |
62DAP/57DAP | 0.91387 | 0.871 |
68DAP/62DAP | 1.10927 | 0.754 |
68DAP/14DAP | 0.97116 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.88325 | 0.065 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.08385 | |
Mature Green Tomato/Ripe Tomato | 1.03909 | 0.881 |
Immature Eggplant/Mature Eggplant | 1.31195 | 0.181 |
Ripe Pepper/Ripe Tomato | 1.28009 | |
Mature Eggplant/Ripe Tomato | 2.8214 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04914 | 0.742 |
1-1-2/M82 | 0.96035 | 0.958 |
12-2/M82 | 1.01425 | 1 |
12-4/M82 | 0.95646 | 1 |
1-3/M82 | 0.94818 | 0.501 |
2-1-1/M82 | 1.12949 | 0.689 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.94455 | 1 |
3-2/M82 | 0.92275 | 0.752 |
4-1-1/M82 | 0.95117 | 1 |
4-1/M82 | 0.93215 | 1 |
4-3-2/M82 | 0.77356 | 0.487 |
4-3/M82 | 1.04641 | 1 |
5-3/M82 | 1.06933 | 0.496 |
6-2/M82 | 1.04216 | 1 |
6-3/M82 | 1.0187 | 1 |
7-1/M82 | 1.06514 | 0.925 |
7-2/M82 | 0.97903 | 1 |
9-3-2/M82 | 0.95919 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.06085 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.07966 | 1 |
IL12-4/WTpooled | 3.17037 | 0.516 |
IL1-4/WTpooled | 0.60233 | |
WT/WTpooled | 0.97178 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.24947 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06055 | 0.921 |
DC3000/delta hrp 6h | 1.2814 | 1 |
DC3000/delta hrp 12h | 0.99725 | 1 |
DC3000/delta hrp 24h | 1.02253 | 0.797 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.16654 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.07003 | 0.423 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97347 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97971 | 1 |
Var 0h | 0.55963 | 0.311 |
Var 12h I row2-row1 | 1.07139 | 0.406 |
Var 12h NI row2-row1 | 0.97972 | 0.906 |
Var 36h I row2-row1 | 0.90891 | 0.805 |
Var 36h NI row2-row1 | 0.99799 | 1 |
Var 60h I row2-row1 | 1.23613 | 1 |
Var 60h NI row2-row1 | 1.09735 | 1 |
Time course 0hI-0hNI | 1.11125 | 0.764 |
Time course 12hI-12hNI | 1.02491 | 0.842 |
Time course 36hI-36hNI | 1.04112 | 0.651 |
Time course 60hI-60hNI | 1.10777 | 0.096 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.83355 | 0.454 |
transgenic ySAMdc/azygous control (breaker) | 1.49996 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.41053 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97838 | 0.163 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.13884 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.17341 | 0.083 |
Manapal/WT (break) | 0.84569 | 0.333 |
Manapal/WT (red) | 0.69681 | 0.181 |
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