Expression of 1-1-3.2.13.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.009761
27DAP/17DAP1.025450.91
39DAP/27DAP0.921530.631
41DAP/39DAP0.950650.772
42DAP/41DAP0.972371
43DAP/42DAP1.045741
47DAP/43DAP1.159320.463
52DAP/47DAP0.923640.769
57DAP/52DAP1.027350.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.976540.455
17DAP/reference1.044910.096
27DAP/reference0.998110.885
39DAP/reference1.117750.214
41DAP/reference1.018640.624
42DAP/reference0.967650.157
43DAP/reference1.016890.812
47DAP/reference1.036340.306
52DAP/reference0.934190.23
57DAP/reference1.036340.548

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.936950.238
27DAP/17DAP0.997880.969
39DAP/27DAP1.050970.663
41DAP/39DAP1.060270.801
42DAP/41DAP1.021261
43DAP/42DAP1.012460.746
47DAP/43DAP1.009630.957
52DAP/47DAP0.990960.935
57DAP/52DAP1.02970.864
57DAP/7DAP0.912161

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.854120.074
17DAP/reference0.88160.012
27DAP/reference0.874790.028
39DAP/reference0.874840.02
41DAP/reference0.843830.032
42DAP/reference0.922440.117
43DAP/reference0.804870.013
47DAP/reference0.88080.03
52DAP/reference0.835750.012
57DAP/reference0.861290.011

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.998580.951
17DAP/reference0.996630.786
27DAP/reference0.952490.34
39DAP/reference0.961880.265
41DAP/reference1.009911
42DAP/reference1.048490.583
43DAP/reference1.050840.466
47DAP/reference1.068530.247
52DAP/reference0.99580.666
57DAP/reference1.070350.116

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.956880.422
17DAP/reference0.978560.592
27DAP/reference0.872430.065
39DAP/reference0.857290.033
41DAP/reference0.856960.019
42DAP/reference0.844330.025
43DAP/reference0.855580.023
47DAP/reference1.00440.731
52DAP/reference0.799930.164
57DAP/reference0.870820.127

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.931490.708
26DAP/20DAP0.940510.512
34DAP/26DAP1.082531
51DAP/34DAP0.889110.217
52DAP/51DAP0.964891
53DAP/52DAP1.009641
55DAP/53DAP1.045570.748
57DAP/55DAP1.129060.461
62DAP/57DAP0.913870.871
68DAP/62DAP1.109270.754
68DAP/14DAP0.971161

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.883250.065

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.08385
Mature Green Tomato/Ripe Tomato1.039090.881
Immature Eggplant/Mature Eggplant1.311950.181
Ripe Pepper/Ripe Tomato1.28009
Mature Eggplant/Ripe Tomato2.82141

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.049140.742
1-1-2/M820.960350.958
12-2/M821.014251
12-4/M820.956461
1-3/M820.948180.501
2-1-1/M821.129490.689
2-1/M82N/AN/A
2-6/M820.944551
3-2/M820.922750.752
4-1-1/M820.951171
4-1/M820.932151
4-3-2/M820.773560.487
4-3/M821.046411
5-3/M821.069330.496
6-2/M821.042161
6-3/M821.01871
7-1/M821.065140.925
7-2/M820.979031
9-3-2/M820.959191

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.060851
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.079661
IL12-4/WTpooled3.170370.516
IL1-4/WTpooled0.60233
WT/WTpooled0.971781

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.249471

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.060550.921
DC3000/delta hrp 6h1.28141
DC3000/delta hrp 12h0.997251
DC3000/delta hrp 24h1.022530.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.166540.145
DC3000 delta B/DC3000 delta AB1.070030.423

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.973471
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.979711
Var 0h0.559630.311
Var 12h I row2-row11.071390.406
Var 12h NI row2-row10.979720.906
Var 36h I row2-row10.908910.805
Var 36h NI row2-row10.997991
Var 60h I row2-row11.236131
Var 60h NI row2-row11.097351
Time course 0hI-0hNI1.111250.764
Time course 12hI-12hNI1.024910.842
Time course 36hI-36hNI1.041120.651
Time course 60hI-60hNI1.107770.096

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.833550.454
transgenic ySAMdc/azygous control (breaker)1.499960.248
transgenic ySAMdc/azygous control (red)1.410530.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.978380.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.138841

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.173410.083
Manapal/WT (break)0.845690.333
Manapal/WT (red)0.696810.181