Tomato Functional Genomics Database (TFGD)

Expression of 1-1-3.2.14.10

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.07375	1
27DAP/17DAP	0.8753	0.807
39DAP/27DAP	1.04863	1
41DAP/39DAP	1.2856	0.483
42DAP/41DAP	1.40463	0.466
43DAP/42DAP	0.83178	0.827
47DAP/43DAP	1.3399	0.569
52DAP/47DAP	0.61855	0.25
57DAP/52DAP	0.96825	0.957

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.77182	0.205
17DAP/reference	1.88108
27DAP/reference	N/A	N/A
39DAP/reference	N/A	N/A
41DAP/reference	1.02576
42DAP/reference	0.91437	0.278
43DAP/reference	N/A	N/A
47DAP/reference	1.05268	0.72
52DAP/reference	0.48414
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.02915	0.782
27DAP/17DAP	1.26948	0.506
39DAP/27DAP	1.04346
41DAP/39DAP	1.09677	0.853
42DAP/41DAP	0.86691	0.568
43DAP/42DAP	0.91029	0.503
47DAP/43DAP	1.07053	0.901
52DAP/47DAP	0.93961	0.834
57DAP/52DAP	0.93468	0.605
57DAP/7DAP	1.43034	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99642	0.758
17DAP/reference	1.07194	0.03
27DAP/reference	1.11161	0.011
39DAP/reference	1.01789	0.391
41DAP/reference	1.02701	0.637
42DAP/reference	0.9391	0.03
43DAP/reference	1.00113	1
47DAP/reference	1.01031	1
52DAP/reference	1.0113	0.636
57DAP/reference	0.98926	0.61

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.55169
17DAP/reference	1.42652	0.014
27DAP/reference	0.8939	0.292
39DAP/reference	1.28835	0.514
41DAP/reference	1.14245	0.199
42DAP/reference	1.23147	0.059
43DAP/reference	1.05078	0.605
47DAP/reference	1.17105	0.011
52DAP/reference	1.45803	0.053
57DAP/reference	1.64085	0.387

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.02544	0.575
17DAP/reference	1.05693	0.551
27DAP/reference	1.10916	0.054
39DAP/reference	1.15836	0.007
41DAP/reference	1.01792	0.692
42DAP/reference	1.00404	0.979
43DAP/reference	1.04504	0.482
47DAP/reference	N/A	N/A
52DAP/reference	1.1308	0.278
57DAP/reference	0.98084	0.661

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.04026	1
26DAP/20DAP	2.00786	0.826
34DAP/26DAP	0.88798	0.21
51DAP/34DAP	1.05189	0.937
52DAP/51DAP	0.86686
53DAP/52DAP	1.39198	0.284
55DAP/53DAP	1.10334	1
57DAP/55DAP	0.95493
62DAP/57DAP	1.85396	0.515
68DAP/62DAP	1.19461	1
68DAP/14DAP	1.3678	0.022

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	N/A	N/A

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.55915
IL2-6/WTpooled	1.20196	0.659
IL7-5/WTpooled	1.63488
IL7-3/WTpooled	0.90119	0.418
IL12-4/WTpooled	0.98338	1
IL1-4/WTpooled	1.04393	0.426
WT/WTpooled	0.95957	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.59631	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.00489	1
Var 0h	1.1594	0.245
Var 12h I row2-row1	0.82899	0.627
Var 12h NI row2-row1	1.01035	1
Var 36h I row2-row1	1.59773	0.908
Var 36h NI row2-row1	0.88562	0.584
Var 60h I row2-row1	0.93407	0.285
Var 60h NI row2-row1	1.06818
Time course 0hI-0hNI	1.07403	0.833
Time course 12hI-12hNI	1.04013	0.868
Time course 36hI-36hNI	0.95227	0.373
Time course 60hI-60hNI	1.06438	0.16

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A