Tomato Functional Genomics Database (TFGD)

Expression of 1-1-3.2.14.13

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.37744	0.348
27DAP/17DAP	1.44589	0.749
39DAP/27DAP	1.22502	0.663
41DAP/39DAP	0.83572	0.447
42DAP/41DAP	1.19214	0.871
43DAP/42DAP	0.99745	0.937
47DAP/43DAP	0.8172	0.42
52DAP/47DAP	1.14496	0.927
57DAP/52DAP	0.98578	0.956

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	N/A	N/A
27DAP/reference	0.86778	0.538
39DAP/reference	N/A	N/A
41DAP/reference	0.76775	0.341
42DAP/reference	1.14465	0.842
43DAP/reference	0.46609	0.012
47DAP/reference	1.21142	0.509
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.00543	1
27DAP/17DAP	1.37685	0.245
39DAP/27DAP	1.32056	0.275
41DAP/39DAP	0.97868	1
42DAP/41DAP	1.20325	0.935
43DAP/42DAP	1.10467	0.699
47DAP/43DAP	1.27204	0.948
52DAP/47DAP	0.83539	0.426
57DAP/52DAP	1.11567	0.618
57DAP/7DAP	0.92563	1

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.05712	0.843
17DAP/reference	1.00073	0.599
27DAP/reference	0.8596	0.058
39DAP/reference	0.94726	0.354
41DAP/reference	1.14393	0.791
42DAP/reference	1.12609	0.686
43DAP/reference	0.99527	0.608
47DAP/reference	0.92004	0.671
52DAP/reference	1.28403	0.052
57DAP/reference	1.01026	0.67

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.71758
17DAP/reference	1.20879	0.756
27DAP/reference	0.85461	0.033
39DAP/reference	1.04752
41DAP/reference	0.79516	0.183
42DAP/reference	N/A	N/A
43DAP/reference	1.77646	0.081
47DAP/reference	0.95195	0.625
52DAP/reference	0.77167	0.433
57DAP/reference	0.985	0.72

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.07341	0.518
17DAP/reference	0.97389	0.668
27DAP/reference	1.07523	0.312
39DAP/reference	1.0187	1
41DAP/reference	0.83742	0.03
42DAP/reference	0.78026	0.025
43DAP/reference	0.88371	0.12
47DAP/reference	N/A	N/A
52DAP/reference	3.05933	0.306
57DAP/reference	N/A	N/A

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.97856	0.966
26DAP/20DAP	N/A	N/A
34DAP/26DAP	0.55147
51DAP/34DAP	0.96789
52DAP/51DAP	1.38625
53DAP/52DAP	12.3539	0.517
55DAP/53DAP	1.22841	0.938
57DAP/55DAP	1.2743	0.975
62DAP/57DAP	1.06736	0.902
68DAP/62DAP	1.17883
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.84856

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.01666	1
IL2-6/WTpooled	0.94569	1
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.68822	0.294
IL12-4/WTpooled	0.84642	1
IL1-4/WTpooled	0.83524	0.422
WT/WTpooled	1.17138	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	0.90917	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.14681	0.556
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.5253	0.782
Var 12h I row2-row1	0.96725	0.948
Var 12h NI row2-row1	1.07719	1
Var 36h I row2-row1	0.64101	1
Var 36h NI row2-row1	1.33067	1
Var 60h I row2-row1	0.93228	0.439
Var 60h NI row2-row1	1.16879	0.904
Time course 0hI-0hNI	0.95751	0.751
Time course 12hI-12hNI	0.9921	1
Time course 36hI-36hNI	0.95032	0.514
Time course 60hI-60hNI	0.73147	0.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	1.09429	1