Tomato Functional Genomics Database (TFGD)

Expression of 1-1-3.2.14.14

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.20617	0.281
27DAP/17DAP	0.96134	0.967
39DAP/27DAP	1.36948	0.449
41DAP/39DAP	0.82815	0.496
42DAP/41DAP	0.96988	1
43DAP/42DAP	1.01729	0.94
47DAP/43DAP	0.98734	0.895
52DAP/47DAP	1.22273	0.75
57DAP/52DAP	1.26413	0.568

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	2.10385	0.011
17DAP/reference	0.96175	0.597
27DAP/reference	0.7749	0.013
39DAP/reference	0.60742	0.018
41DAP/reference	1.1785	0.241
42DAP/reference	1.60979	0.001
43DAP/reference	1.09051	0.596
47DAP/reference	0.84348	0.3
52DAP/reference	0.59877	0.013
57DAP/reference	0.60242	0.017

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.69889
27DAP/17DAP	1.83068	0.554
39DAP/27DAP	N/A	N/A
41DAP/39DAP	N/A	N/A
42DAP/41DAP	N/A	N/A
43DAP/42DAP	1.64552
47DAP/43DAP	N/A	N/A
52DAP/47DAP	0.69827
57DAP/52DAP	1.01988
57DAP/7DAP	1.7574

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	2.28765	0.024
17DAP/reference	1.6796	0.014
27DAP/reference	1.22008	0.041
39DAP/reference	1.15556	0.133
41DAP/reference	1.36548	0.011
42DAP/reference	1.28006	0.174
43DAP/reference	1.08488	0.2
47DAP/reference	1.19242	0.279
52DAP/reference	1.0225	0.832
57DAP/reference	0.97809	0.494

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.47567	0.134
17DAP/reference	1.89413	0.338
27DAP/reference	1.41262	0.109
39DAP/reference	1.09547	0.602
41DAP/reference	1.20986	0.91
42DAP/reference	1.99641	0.009
43DAP/reference	1.0846	0.647
47DAP/reference	1.61747	0.008
52DAP/reference	0.66423	0.037
57DAP/reference	1.07521	0.789

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.73587	0.015
17DAP/reference	1.42422	0.14
27DAP/reference	1.1289	0.105
39DAP/reference	1.05842	0.377
41DAP/reference	1.05653	0.357
42DAP/reference	1.04565	0.943
43DAP/reference	1.27893	0.264
47DAP/reference	0.62862	0.018
52DAP/reference	0.99487	0.763
57DAP/reference	1.03164	0.828

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	N/A	N/A
26DAP/20DAP	0.37596	0.205
34DAP/26DAP	0.73636	0.197
51DAP/34DAP	1.42464
52DAP/51DAP	1.07388	1
53DAP/52DAP	0.48423	0.445
55DAP/53DAP	0.90822	0.761
57DAP/55DAP	0.81296	0.647
62DAP/57DAP	1.04726
68DAP/62DAP	1.28017
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	N/A	N/A

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	0.98329	1
IL7-5/WTpooled	1.22132
IL7-3/WTpooled	1.23677	1
IL12-4/WTpooled	1.11317	0.891
IL1-4/WTpooled	0.88714	0.699
WT/WTpooled	0.8744	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.0548	0.936
Var 12h I row2-row1	1.22293
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.53972	0.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	1.19338	1
Manapal/WT (red)	N/A	N/A