Expression of 1-1-3.2.14.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.010681
27DAP/17DAP1.072050.872
39DAP/27DAP0.873390.512
41DAP/39DAP1.153450.464
42DAP/41DAP0.899151
43DAP/42DAP1.098820.949
47DAP/43DAP1.088370.776
52DAP/47DAP0.979620.865
57DAP/52DAP1.049931

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.176680.116
17DAP/reference0.954260.503
27DAP/reference0.781890.059
39DAP/reference0.75440.081
41DAP/reference0.869960.201
42DAP/reference0.991520.469
43DAP/reference0.923120.088
47DAP/reference0.949250.258
52DAP/reference0.697490.029
57DAP/reference0.88330.019

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.908870.376
27DAP/17DAP1.062580.712
39DAP/27DAP1.134530.314
41DAP/39DAP1.124860.773
42DAP/41DAP1.011780.932
43DAP/42DAP1.095270.134
47DAP/43DAP0.99290.977
52DAP/47DAP1.050520.804
57DAP/52DAP0.982720.742
57DAP/7DAP1.114041

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.92270.246
17DAP/reference1.084310.297
27DAP/reference1.119260.06
39DAP/reference1.21650.015
41DAP/reference1.15730.153
42DAP/reference1.598050.007
43DAP/reference1.608430.007
47DAP/reference1.227790.44
52DAP/reference1.519260.008
57DAP/reference1.509820.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.150250.261
17DAP/reference1.522010.016
27DAP/reference1.046260.902
39DAP/reference0.946010.289
41DAP/reference0.96820.422
42DAP/reference1.075270.68
43DAP/reference1.111250.205
47DAP/reference1.006881
52DAP/reference0.790850.043
57DAP/reference0.983360.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.853240.082
17DAP/reference1.004640.918
27DAP/reference1.040160.834
39DAP/reference1.026890.813
41DAP/reference1.118540.074
42DAP/reference1.19780.065
43DAP/reference1.087780.439
47DAP/reference0.78170.013
52DAP/reference1.037650.928
57DAP/reference0.853010.064

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.992651
26DAP/20DAP0.822690.512
34DAP/26DAP1.252480.19
51DAP/34DAP0.979120.873
52DAP/51DAP0.916981
53DAP/52DAP1.057290.738
55DAP/53DAP1.016611
57DAP/55DAP1.072080.256
62DAP/57DAP0.973320.871
68DAP/62DAP0.780250.126
68DAP/14DAP0.682240.09

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.885040.072

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.121531
Immature Eggplant/Mature Eggplant0.788130.096
Ripe Pepper/Ripe Tomato1.063641
Mature Eggplant/Ripe Tomato1.15217

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.02931
1-1-2/M820.986861
12-2/M821.105821
12-4/M821.010381
1-3/M820.851440.501
2-1-1/M821.14308
2-1/M82N/AN/A
2-6/M821.120980.505
3-2/M820.907990.428
4-1-1/M821.054831
4-1/M821.104690.853
4-3-2/M820.917871
4-3/M821.008541
5-3/M820.988651
6-2/M820.914631
6-3/M820.987531
7-1/M820.85297
7-2/M820.970240.881
9-3-2/M820.97491

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.095561
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.341431
IL12-4/WTpooled1.256750.646
IL1-4/WTpooled1.3267
WT/WTpooled1.969871

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.76080.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.991081
DC3000/delta hrp 6h1.034591
DC3000/delta hrp 12h1.181091
DC3000/delta hrp 24h1.023330.797

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.296490.333
DC3000 delta B/DC3000 delta AB0.988140.873

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.011161
Exp 36h1.066921
Exp 60h1.179890.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001411
Var 0h0.490161
Var 12h I row2-row11.073360.506
Var 12h NI row2-row10.942570.82
Var 36h I row2-row10.97151
Var 36h NI row2-row10.907230.743
Var 60h I row2-row10.864370.832
Var 60h NI row2-row11.028131
Time course 0hI-0hNI1.111840.574
Time course 12hI-12hNI1.065510.668
Time course 36hI-36hNI1.114250.316
Time course 60hI-60hNI1.73920.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.139570.321
transgenic ySAMdc/azygous control (breaker)1.02851
transgenic ySAMdc/azygous control (red)1.083030.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.298180.194

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.164580.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.556750.14
Manapal/WT (break)1.084271
Manapal/WT (red)1.243820.413