Expression of 1-1-3.2.14.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01068 | 1 |
27DAP/17DAP | 1.07205 | 0.872 |
39DAP/27DAP | 0.87339 | 0.512 |
41DAP/39DAP | 1.15345 | 0.464 |
42DAP/41DAP | 0.89915 | 1 |
43DAP/42DAP | 1.09882 | 0.949 |
47DAP/43DAP | 1.08837 | 0.776 |
52DAP/47DAP | 0.97962 | 0.865 |
57DAP/52DAP | 1.04993 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17668 | 0.116 |
17DAP/reference | 0.95426 | 0.503 |
27DAP/reference | 0.78189 | 0.059 |
39DAP/reference | 0.7544 | 0.081 |
41DAP/reference | 0.86996 | 0.201 |
42DAP/reference | 0.99152 | 0.469 |
43DAP/reference | 0.92312 | 0.088 |
47DAP/reference | 0.94925 | 0.258 |
52DAP/reference | 0.69749 | 0.029 |
57DAP/reference | 0.8833 | 0.019 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90887 | 0.376 |
27DAP/17DAP | 1.06258 | 0.712 |
39DAP/27DAP | 1.13453 | 0.314 |
41DAP/39DAP | 1.12486 | 0.773 |
42DAP/41DAP | 1.01178 | 0.932 |
43DAP/42DAP | 1.09527 | 0.134 |
47DAP/43DAP | 0.9929 | 0.977 |
52DAP/47DAP | 1.05052 | 0.804 |
57DAP/52DAP | 0.98272 | 0.742 |
57DAP/7DAP | 1.11404 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9227 | 0.246 |
17DAP/reference | 1.08431 | 0.297 |
27DAP/reference | 1.11926 | 0.06 |
39DAP/reference | 1.2165 | 0.015 |
41DAP/reference | 1.1573 | 0.153 |
42DAP/reference | 1.59805 | 0.007 |
43DAP/reference | 1.60843 | 0.007 |
47DAP/reference | 1.22779 | 0.44 |
52DAP/reference | 1.51926 | 0.008 |
57DAP/reference | 1.50982 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15025 | 0.261 |
17DAP/reference | 1.52201 | 0.016 |
27DAP/reference | 1.04626 | 0.902 |
39DAP/reference | 0.94601 | 0.289 |
41DAP/reference | 0.9682 | 0.422 |
42DAP/reference | 1.07527 | 0.68 |
43DAP/reference | 1.11125 | 0.205 |
47DAP/reference | 1.00688 | 1 |
52DAP/reference | 0.79085 | 0.043 |
57DAP/reference | 0.98336 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85324 | 0.082 |
17DAP/reference | 1.00464 | 0.918 |
27DAP/reference | 1.04016 | 0.834 |
39DAP/reference | 1.02689 | 0.813 |
41DAP/reference | 1.11854 | 0.074 |
42DAP/reference | 1.1978 | 0.065 |
43DAP/reference | 1.08778 | 0.439 |
47DAP/reference | 0.7817 | 0.013 |
52DAP/reference | 1.03765 | 0.928 |
57DAP/reference | 0.85301 | 0.064 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99265 | 1 |
26DAP/20DAP | 0.82269 | 0.512 |
34DAP/26DAP | 1.25248 | 0.19 |
51DAP/34DAP | 0.97912 | 0.873 |
52DAP/51DAP | 0.91698 | 1 |
53DAP/52DAP | 1.05729 | 0.738 |
55DAP/53DAP | 1.01661 | 1 |
57DAP/55DAP | 1.07208 | 0.256 |
62DAP/57DAP | 0.97332 | 0.871 |
68DAP/62DAP | 0.78025 | 0.126 |
68DAP/14DAP | 0.68224 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.88504 | 0.072 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.12153 | 1 |
Immature Eggplant/Mature Eggplant | 0.78813 | 0.096 |
Ripe Pepper/Ripe Tomato | 1.06364 | 1 |
Mature Eggplant/Ripe Tomato | 1.15217 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.0293 | 1 |
1-1-2/M82 | 0.98686 | 1 |
12-2/M82 | 1.10582 | 1 |
12-4/M82 | 1.01038 | 1 |
1-3/M82 | 0.85144 | 0.501 |
2-1-1/M82 | 1.14308 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.12098 | 0.505 |
3-2/M82 | 0.90799 | 0.428 |
4-1-1/M82 | 1.05483 | 1 |
4-1/M82 | 1.10469 | 0.853 |
4-3-2/M82 | 0.91787 | 1 |
4-3/M82 | 1.00854 | 1 |
5-3/M82 | 0.98865 | 1 |
6-2/M82 | 0.91463 | 1 |
6-3/M82 | 0.98753 | 1 |
7-1/M82 | 0.85297 | |
7-2/M82 | 0.97024 | 0.881 |
9-3-2/M82 | 0.97491 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.09556 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.34143 | 1 |
IL12-4/WTpooled | 1.25675 | 0.646 |
IL1-4/WTpooled | 1.3267 | |
WT/WTpooled | 1.96987 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.7608 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99108 | 1 |
DC3000/delta hrp 6h | 1.03459 | 1 |
DC3000/delta hrp 12h | 1.18109 | 1 |
DC3000/delta hrp 24h | 1.02333 | 0.797 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.29649 | 0.333 |
DC3000 delta B/DC3000 delta AB | 0.98814 | 0.873 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.01116 | 1 |
Exp 36h | 1.06692 | 1 |
Exp 60h | 1.17989 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00141 | 1 |
Var 0h | 0.49016 | 1 |
Var 12h I row2-row1 | 1.07336 | 0.506 |
Var 12h NI row2-row1 | 0.94257 | 0.82 |
Var 36h I row2-row1 | 0.9715 | 1 |
Var 36h NI row2-row1 | 0.90723 | 0.743 |
Var 60h I row2-row1 | 0.86437 | 0.832 |
Var 60h NI row2-row1 | 1.02813 | 1 |
Time course 0hI-0hNI | 1.11184 | 0.574 |
Time course 12hI-12hNI | 1.06551 | 0.668 |
Time course 36hI-36hNI | 1.11425 | 0.316 |
Time course 60hI-60hNI | 1.7392 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13957 | 0.321 |
transgenic ySAMdc/azygous control (breaker) | 1.0285 | 1 |
transgenic ySAMdc/azygous control (red) | 1.08303 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.29818 | 0.194 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.16458 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.55675 | 0.14 |
Manapal/WT (break) | 1.08427 | 1 |
Manapal/WT (red) | 1.24382 | 0.413 |
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