Tomato Functional Genomics Database (TFGD)

Expression of 1-1-3.2.14.16

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.14726	0.617
27DAP/17DAP	1.6259	0.73
39DAP/27DAP	1.66677	0.622
41DAP/39DAP	0.76135	0.357
42DAP/41DAP	0.76837	0.774
43DAP/42DAP	0.76047	0.751
47DAP/43DAP	1.123	0.979
52DAP/47DAP	1.0607	0.994
57DAP/52DAP	1.33378	0.886

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.42416	0.04
17DAP/reference	1.36428	0.092
27DAP/reference	0.89059	0.061
39DAP/reference	0.93954	0.554
41DAP/reference	0.72255	0.021
42DAP/reference	1.14601	0.467
43DAP/reference	0.89483	0.691
47DAP/reference	0.6212	0.258
52DAP/reference	0.488
57DAP/reference	1.29291

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.47686
27DAP/17DAP	1.39276	0.362
39DAP/27DAP	0.71135	0.113
41DAP/39DAP	1.61792
42DAP/41DAP	1.39029
43DAP/42DAP	1.87964	0.413
47DAP/43DAP	0.70933	0.102
52DAP/47DAP	0.97431	0.905
57DAP/52DAP	0.83675	0.375
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.20481	0.067
17DAP/reference	1.13808	0.147
27DAP/reference	1.23046	0.107
39DAP/reference	1.6943	0.006
41DAP/reference	1.56045	0.01
42DAP/reference	1.39168	0.024
43DAP/reference	1.48908	0.016
47DAP/reference	1.34337	0.124
52DAP/reference	1.54793	0.024
57DAP/reference	1.43175	0.006

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.94583	0.607
17DAP/reference	1.46961	0.036
27DAP/reference	1.21349	0.029
39DAP/reference	1.34408	0.848
41DAP/reference	1.51213	0.142
42DAP/reference	N/A	N/A
43DAP/reference	1.32254	0.605
47DAP/reference	2.03127	0.033
52DAP/reference	1.15384	0.085
57DAP/reference	1.28003	0.848

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.06423	0.775
17DAP/reference	1.09896	1
27DAP/reference	1.19547	0.179
39DAP/reference	1.16535	0.039
41DAP/reference	1.28687	0.039
42DAP/reference	1.18671	0.333
43DAP/reference	1.14811	0.148
47DAP/reference	1.62844	0.405
52DAP/reference	1.21986	0.216
57DAP/reference	1.26688	0.214

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.42713
26DAP/20DAP	5.58115	0.421
34DAP/26DAP	1.42213	1
51DAP/34DAP	0.96826	0.835
52DAP/51DAP	0.9121
53DAP/52DAP	0.66396	0.21
55DAP/53DAP	1.63475	0.771
57DAP/55DAP	0.95686
62DAP/57DAP	0.2035
68DAP/62DAP	0.87383
68DAP/14DAP	1.06754	0.85

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	3.44561	0.7

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.14627	1
IL2-6/WTpooled	1.08999	0.584
IL7-5/WTpooled	0.15437
IL7-3/WTpooled	0.95335	1
IL12-4/WTpooled	0.94743	1
IL1-4/WTpooled	1.05169	1
WT/WTpooled	1.02826	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	0.92194	0.933
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A