Expression of 1-1-3.2.14.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99073 | 0.596 |
27DAP/17DAP | 1.32834 | 0.798 |
39DAP/27DAP | 0.81263 | 0.353 |
41DAP/39DAP | 0.88162 | 0.506 |
42DAP/41DAP | 1.11165 | 1 |
43DAP/42DAP | 1.21226 | 0.957 |
47DAP/43DAP | 0.93157 | 0.705 |
52DAP/47DAP | 1.28402 | 0.773 |
57DAP/52DAP | 0.71748 | 0.889 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.61288 | 0.101 |
17DAP/reference | 1.03516 | 0.813 |
27DAP/reference | 1.24861 | 0.277 |
39DAP/reference | 1.14322 | 0.828 |
41DAP/reference | 0.70709 | 0.085 |
42DAP/reference | 1.63246 | 0.901 |
43DAP/reference | N/A | N/A |
47DAP/reference | 0.57174 | 0.001 |
52DAP/reference | 1.15015 | 0.878 |
57DAP/reference | 0.35303 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97763 | 0.75 |
27DAP/17DAP | 0.87569 | 0.475 |
39DAP/27DAP | 1.0091 | 0.997 |
41DAP/39DAP | 1.2917 | 0.02 |
42DAP/41DAP | 0.87779 | 0.466 |
43DAP/42DAP | 1.08194 | 0.413 |
47DAP/43DAP | 1.2701 | 0.805 |
52DAP/47DAP | 1.52125 | 0.319 |
57DAP/52DAP | 1.0293 | 0.907 |
57DAP/7DAP | 1.25704 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28607 | 0.053 |
17DAP/reference | 1.31697 | 0.014 |
27DAP/reference | 1.28306 | 0.023 |
39DAP/reference | 1.26246 | 0.032 |
41DAP/reference | 1.28299 | 0.034 |
42DAP/reference | 1.55136 | 0.1 |
43DAP/reference | 1.22162 | 0.118 |
47DAP/reference | 1.19081 | 0.169 |
52DAP/reference | 1.02176 | 0.802 |
57DAP/reference | 1.29303 | 0.094 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.44952 | |
17DAP/reference | 0.91742 | |
27DAP/reference | 1.21143 | 1 |
39DAP/reference | 1.09291 | 0.783 |
41DAP/reference | 1.10984 | 1 |
42DAP/reference | 2.54529 | 0.259 |
43DAP/reference | 0.77764 | 0.117 |
47DAP/reference | 0.76071 | 0.113 |
52DAP/reference | 1.22328 | 0.168 |
57DAP/reference | 1.00455 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.30665 | 0.06 |
17DAP/reference | 1.12866 | 0.551 |
27DAP/reference | 1.4087 | 0.018 |
39DAP/reference | 1.32817 | 0.011 |
41DAP/reference | 1.14486 | 0.471 |
42DAP/reference | 1.16194 | 0.408 |
43DAP/reference | 0.87577 | 0.384 |
47DAP/reference | N/A | N/A |
52DAP/reference | 1.51951 | 0.053 |
57DAP/reference | 1.94683 | |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | N/A | N/A |
26DAP/20DAP | 1.45327 | 0.259 |
34DAP/26DAP | 1.11303 | |
51DAP/34DAP | 0.68848 | |
52DAP/51DAP | 0.44029 | |
53DAP/52DAP | 1.06689 | 1 |
55DAP/53DAP | 1.03252 | 1 |
57DAP/55DAP | 1.08043 | 0.947 |
62DAP/57DAP | 0.91943 | 0.681 |
68DAP/62DAP | 0.39537 | |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 4.04366 | 0.558 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.95997 | |
IL2-6/WTpooled | 1.22199 | 0.419 |
IL7-5/WTpooled | 2.32966 | |
IL7-3/WTpooled | 0.92493 | 0.418 |
IL12-4/WTpooled | 1.13955 | 0.595 |
IL1-4/WTpooled | 1.14275 | 1 |
WT/WTpooled | 1.03275 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96856 | 1 |
Var 0h | 1.0982 | 0.259 |
Var 12h I row2-row1 | 1.04498 | 0.692 |
Var 12h NI row2-row1 | 0.91345 | 0.713 |
Var 36h I row2-row1 | 1.14993 | 0.908 |
Var 36h NI row2-row1 | 1.02056 | 1 |
Var 60h I row2-row1 | 1.00079 | 1 |
Var 60h NI row2-row1 | 1.00509 | |
Time course 0hI-0hNI | 1.01569 | 0.852 |
Time course 12hI-12hNI | 1.10615 | 0.475 |
Time course 36hI-36hNI | 1.05452 | 0.28 |
Time course 60hI-60hNI | 1.2149 | 0.069 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.72853 | 0.333 |
Manapal/WT (red) | N/A | N/A |
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