Expression of 1-1-3.2.14.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.990730.596
27DAP/17DAP1.328340.798
39DAP/27DAP0.812630.353
41DAP/39DAP0.881620.506
42DAP/41DAP1.111651
43DAP/42DAP1.212260.957
47DAP/43DAP0.931570.705
52DAP/47DAP1.284020.773
57DAP/52DAP0.717480.889

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.612880.101
17DAP/reference1.035160.813
27DAP/reference1.248610.277
39DAP/reference1.143220.828
41DAP/reference0.707090.085
42DAP/reference1.632460.901
43DAP/referenceN/AN/A
47DAP/reference0.571740.001
52DAP/reference1.150150.878
57DAP/reference0.35303

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.977630.75
27DAP/17DAP0.875690.475
39DAP/27DAP1.00910.997
41DAP/39DAP1.29170.02
42DAP/41DAP0.877790.466
43DAP/42DAP1.081940.413
47DAP/43DAP1.27010.805
52DAP/47DAP1.521250.319
57DAP/52DAP1.02930.907
57DAP/7DAP1.25704

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.286070.053
17DAP/reference1.316970.014
27DAP/reference1.283060.023
39DAP/reference1.262460.032
41DAP/reference1.282990.034
42DAP/reference1.551360.1
43DAP/reference1.221620.118
47DAP/reference1.190810.169
52DAP/reference1.021760.802
57DAP/reference1.293030.094

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.44952
17DAP/reference0.91742
27DAP/reference1.211431
39DAP/reference1.092910.783
41DAP/reference1.109841
42DAP/reference2.545290.259
43DAP/reference0.777640.117
47DAP/reference0.760710.113
52DAP/reference1.223280.168
57DAP/reference1.004551

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.306650.06
17DAP/reference1.128660.551
27DAP/reference1.40870.018
39DAP/reference1.328170.011
41DAP/reference1.144860.471
42DAP/reference1.161940.408
43DAP/reference0.875770.384
47DAP/referenceN/AN/A
52DAP/reference1.519510.053
57DAP/reference1.94683

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAPN/AN/A
26DAP/20DAP1.453270.259
34DAP/26DAP1.11303
51DAP/34DAP0.68848
52DAP/51DAP0.44029
53DAP/52DAP1.066891
55DAP/53DAP1.032521
57DAP/55DAP1.080430.947
62DAP/57DAP0.919430.681
68DAP/62DAP0.39537
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker4.043660.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.95997
IL2-6/WTpooled1.221990.419
IL7-5/WTpooled2.32966
IL7-3/WTpooled0.924930.418
IL12-4/WTpooled1.139550.595
IL1-4/WTpooled1.142751
WT/WTpooled1.032751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.968561
Var 0h1.09820.259
Var 12h I row2-row11.044980.692
Var 12h NI row2-row10.913450.713
Var 36h I row2-row11.149930.908
Var 36h NI row2-row11.020561
Var 60h I row2-row11.000791
Var 60h NI row2-row11.00509
Time course 0hI-0hNI1.015690.852
Time course 12hI-12hNI1.106150.475
Time course 36hI-36hNI1.054520.28
Time course 60hI-60hNI1.21490.069

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.728530.333
Manapal/WT (red)N/AN/A