Expression of 1-1-3.2.14.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.791110.221
27DAP/17DAP0.9230.846
39DAP/27DAP1.253080.693
41DAP/39DAP1.223570.657
42DAP/41DAP0.92221
43DAP/42DAP0.743950.456
47DAP/43DAP0.675260.135
52DAP/47DAP1.272790.543
57DAP/52DAP0.952310.94

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.474480.013
17DAP/reference1.06450.384
27DAP/reference0.935310.223
39DAP/reference1.002821
41DAP/reference1.080630.187
42DAP/reference1.010211
43DAP/reference0.937770.273
47DAP/reference0.959560.224
52DAP/reference0.858640.047
57DAP/reference0.861490.017

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.941480.578
27DAP/17DAP1.032530.951
39DAP/27DAP1.068740.532
41DAP/39DAP1.036770.853
42DAP/41DAP1.096290.208
43DAP/42DAP0.875640.132
47DAP/43DAP0.898260.131
52DAP/47DAP0.961020.837
57DAP/52DAP1.079150.601
57DAP/7DAP1.199040.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.954030.402
17DAP/reference1.15210.199
27DAP/reference1.045940.371
39DAP/reference1.024520.74
41DAP/reference1.009180.741
42DAP/reference0.912540.058
43DAP/reference0.88890.145
47DAP/reference1.040640.604
52DAP/reference0.787010.016
57DAP/reference0.933410.149

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.179050.053
17DAP/reference1.167880.036
27DAP/reference1.207430.039
39DAP/reference1.108330.477
41DAP/reference0.985070.505
42DAP/reference1.142840.195
43DAP/reference1.17690.503
47DAP/reference1.0250.658
52DAP/reference1.045120.629
57DAP/reference1.038320.724

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.089630.659
17DAP/reference1.11650.538
27DAP/reference1.001650.883
39DAP/reference1.078220.163
41DAP/reference1.086620.502
42DAP/reference1.038570.671
43DAP/reference1.078270.302
47DAP/reference0.979490.525
52DAP/reference1.273430.072
57DAP/reference1.052480.892

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.089110.966
26DAP/20DAP0.888750.317
34DAP/26DAP0.9240.795
51DAP/34DAP0.857540.36
52DAP/51DAP1.086060.492
53DAP/52DAP1.063790.935
55DAP/53DAP1.154160.666
57DAP/55DAP0.971750.839
62DAP/57DAP0.831220.162
68DAP/62DAP0.776380.314
68DAP/14DAP0.606730.086

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.025180.016

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.938460.591
Mature Green Tomato/Ripe Tomato2.323150.095
Immature Eggplant/Mature Eggplant1.785580.05
Ripe Pepper/Ripe Tomato2.42810.258
Mature Eggplant/Ripe Tomato1.898541

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.08505
12-2/M82N/AN/A
12-4/M820.97573
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M820.889451
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.754770.698
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.86689
7-2/M82N/AN/A
9-3-2/M820.819340.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.350950.441
IL7-5/WTpooled0.82975
IL7-3/WTpooled0.199210.293
IL12-4/WTpooled0.538730.478
IL1-4/WTpooled0.974271
WT/WTpooled1.048560.686

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.997611

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.81891
DC3000/delta hrp 6h1.253840.978
DC3000/delta hrp 12h0.837091
DC3000/delta hrp 24h1.693050.028

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.073380.27
DC3000 delta B/DC3000 delta AB1.24440.175

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.022561
Exp 36h0.788630.406
Exp 60h0.885330.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.013591
Var 0h1.039721
Var 12h I row2-row11.079880.506
Var 12h NI row2-row10.92420.488
Var 36h I row2-row11.29740.339
Var 36h NI row2-row11.031651
Var 60h I row2-row10.940850.439
Var 60h NI row2-row11.018471
Time course 0hI-0hNI1.016990.867
Time course 12hI-12hNI1.041040.741
Time course 36hI-36hNI1.342780.009
Time course 60hI-60hNI1.264810.01

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.94930.485
transgenic ySAMdc/azygous control (breaker)0.847570.251
transgenic ySAMdc/azygous control (red)0.850861

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.036020.105

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.22820.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.01631
Manapal/WT (break)0.939261
Manapal/WT (red)1.115951