Expression of 1-1-3.2.14.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79111 | 0.221 |
27DAP/17DAP | 0.923 | 0.846 |
39DAP/27DAP | 1.25308 | 0.693 |
41DAP/39DAP | 1.22357 | 0.657 |
42DAP/41DAP | 0.9222 | 1 |
43DAP/42DAP | 0.74395 | 0.456 |
47DAP/43DAP | 0.67526 | 0.135 |
52DAP/47DAP | 1.27279 | 0.543 |
57DAP/52DAP | 0.95231 | 0.94 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47448 | 0.013 |
17DAP/reference | 1.0645 | 0.384 |
27DAP/reference | 0.93531 | 0.223 |
39DAP/reference | 1.00282 | 1 |
41DAP/reference | 1.08063 | 0.187 |
42DAP/reference | 1.01021 | 1 |
43DAP/reference | 0.93777 | 0.273 |
47DAP/reference | 0.95956 | 0.224 |
52DAP/reference | 0.85864 | 0.047 |
57DAP/reference | 0.86149 | 0.017 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94148 | 0.578 |
27DAP/17DAP | 1.03253 | 0.951 |
39DAP/27DAP | 1.06874 | 0.532 |
41DAP/39DAP | 1.03677 | 0.853 |
42DAP/41DAP | 1.09629 | 0.208 |
43DAP/42DAP | 0.87564 | 0.132 |
47DAP/43DAP | 0.89826 | 0.131 |
52DAP/47DAP | 0.96102 | 0.837 |
57DAP/52DAP | 1.07915 | 0.601 |
57DAP/7DAP | 1.19904 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95403 | 0.402 |
17DAP/reference | 1.1521 | 0.199 |
27DAP/reference | 1.04594 | 0.371 |
39DAP/reference | 1.02452 | 0.74 |
41DAP/reference | 1.00918 | 0.741 |
42DAP/reference | 0.91254 | 0.058 |
43DAP/reference | 0.8889 | 0.145 |
47DAP/reference | 1.04064 | 0.604 |
52DAP/reference | 0.78701 | 0.016 |
57DAP/reference | 0.93341 | 0.149 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17905 | 0.053 |
17DAP/reference | 1.16788 | 0.036 |
27DAP/reference | 1.20743 | 0.039 |
39DAP/reference | 1.10833 | 0.477 |
41DAP/reference | 0.98507 | 0.505 |
42DAP/reference | 1.14284 | 0.195 |
43DAP/reference | 1.1769 | 0.503 |
47DAP/reference | 1.025 | 0.658 |
52DAP/reference | 1.04512 | 0.629 |
57DAP/reference | 1.03832 | 0.724 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08963 | 0.659 |
17DAP/reference | 1.1165 | 0.538 |
27DAP/reference | 1.00165 | 0.883 |
39DAP/reference | 1.07822 | 0.163 |
41DAP/reference | 1.08662 | 0.502 |
42DAP/reference | 1.03857 | 0.671 |
43DAP/reference | 1.07827 | 0.302 |
47DAP/reference | 0.97949 | 0.525 |
52DAP/reference | 1.27343 | 0.072 |
57DAP/reference | 1.05248 | 0.892 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.08911 | 0.966 |
26DAP/20DAP | 0.88875 | 0.317 |
34DAP/26DAP | 0.924 | 0.795 |
51DAP/34DAP | 0.85754 | 0.36 |
52DAP/51DAP | 1.08606 | 0.492 |
53DAP/52DAP | 1.06379 | 0.935 |
55DAP/53DAP | 1.15416 | 0.666 |
57DAP/55DAP | 0.97175 | 0.839 |
62DAP/57DAP | 0.83122 | 0.162 |
68DAP/62DAP | 0.77638 | 0.314 |
68DAP/14DAP | 0.60673 | 0.086 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.02518 | 0.016 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.93846 | 0.591 |
Mature Green Tomato/Ripe Tomato | 2.32315 | 0.095 |
Immature Eggplant/Mature Eggplant | 1.78558 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.4281 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.89854 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.08505 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.97573 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 0.88945 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.75477 | 0.698 |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.86689 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.81934 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.35095 | 0.441 |
IL7-5/WTpooled | 0.82975 | |
IL7-3/WTpooled | 0.19921 | 0.293 |
IL12-4/WTpooled | 0.53873 | 0.478 |
IL1-4/WTpooled | 0.97427 | 1 |
WT/WTpooled | 1.04856 | 0.686 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99761 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.8189 | 1 |
DC3000/delta hrp 6h | 1.25384 | 0.978 |
DC3000/delta hrp 12h | 0.83709 | 1 |
DC3000/delta hrp 24h | 1.69305 | 0.028 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07338 | 0.27 |
DC3000 delta B/DC3000 delta AB | 1.2444 | 0.175 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02256 | 1 |
Exp 36h | 0.78863 | 0.406 |
Exp 60h | 0.88533 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01359 | 1 |
Var 0h | 1.03972 | 1 |
Var 12h I row2-row1 | 1.07988 | 0.506 |
Var 12h NI row2-row1 | 0.9242 | 0.488 |
Var 36h I row2-row1 | 1.2974 | 0.339 |
Var 36h NI row2-row1 | 1.03165 | 1 |
Var 60h I row2-row1 | 0.94085 | 0.439 |
Var 60h NI row2-row1 | 1.01847 | 1 |
Time course 0hI-0hNI | 1.01699 | 0.867 |
Time course 12hI-12hNI | 1.04104 | 0.741 |
Time course 36hI-36hNI | 1.34278 | 0.009 |
Time course 60hI-60hNI | 1.26481 | 0.01 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9493 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 0.84757 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.85086 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03602 | 0.105 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.2282 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.0163 | 1 |
Manapal/WT (break) | 0.93926 | 1 |
Manapal/WT (red) | 1.11595 | 1 |
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