Expression of 1-1-3.2.16.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.15034 | 0.709 |
27DAP/17DAP | 1.05385 | 1 |
39DAP/27DAP | 1.5533 | 0.176 |
41DAP/39DAP | 1.0147 | 0.69 |
42DAP/41DAP | 0.99555 | 1 |
43DAP/42DAP | 1.1314 | 1 |
47DAP/43DAP | 1.40065 | 0.442 |
52DAP/47DAP | 1.05281 | 0.916 |
57DAP/52DAP | 1.26527 | 0.904 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93198 | 0.224 |
17DAP/reference | 0.93168 | 0.097 |
27DAP/reference | 0.98192 | 0.623 |
39DAP/reference | 0.97528 | 0.704 |
41DAP/reference | 0.95663 | 0.341 |
42DAP/reference | 0.99492 | 0.531 |
43DAP/reference | 1.02786 | 0.758 |
47DAP/reference | 1.01858 | 0.817 |
52DAP/reference | 0.98698 | 0.58 |
57DAP/reference | 1.10647 | 0.019 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06724 | 1 |
27DAP/17DAP | 0.91613 | 0.684 |
39DAP/27DAP | 0.92635 | 0.536 |
41DAP/39DAP | 0.95858 | 0.923 |
42DAP/41DAP | 1.07782 | 0.719 |
43DAP/42DAP | 1.04955 | 0.554 |
47DAP/43DAP | 1.00959 | 1 |
52DAP/47DAP | 1.11944 | 0.681 |
57DAP/52DAP | 1.06498 | 0.662 |
57DAP/7DAP | 1.03469 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17417 | 0.173 |
17DAP/reference | 1.53419 | 0.025 |
27DAP/reference | 1.41464 | 0.007 |
39DAP/reference | 1.45998 | 0.044 |
41DAP/reference | 1.34537 | 0.104 |
42DAP/reference | 1.52355 | 0.009 |
43DAP/reference | 1.44979 | 0.035 |
47DAP/reference | 1.37859 | 0.037 |
52DAP/reference | 1.5717 | 0.007 |
57DAP/reference | 1.70129 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90282 | 0.231 |
17DAP/reference | 0.94793 | 0.214 |
27DAP/reference | 1.12954 | 0.192 |
39DAP/reference | 0.97629 | 0.485 |
41DAP/reference | 1.02818 | 0.944 |
42DAP/reference | 1.02928 | 0.969 |
43DAP/reference | 0.85076 | 0.201 |
47DAP/reference | 0.9883 | 0.487 |
52DAP/reference | 0.92159 | 0.012 |
57DAP/reference | 0.82515 | 0.021 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52439 | 0.019 |
17DAP/reference | 1.2062 | 0.17 |
27DAP/reference | 1.55091 | 0.016 |
39DAP/reference | 1.45634 | 0.007 |
41DAP/reference | 1.57214 | 0.016 |
42DAP/reference | 1.33375 | 0.038 |
43DAP/reference | 1.63548 | 0.022 |
47DAP/reference | 1.16741 | 0.085 |
52DAP/reference | 1.63741 | 0.086 |
57DAP/reference | 1.46062 | 0.038 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.18742 | 0.735 |
26DAP/20DAP | 0.96634 | 1 |
34DAP/26DAP | 1.23434 | 0.542 |
51DAP/34DAP | 1.12692 | 0.627 |
52DAP/51DAP | 1.25464 | 0.253 |
53DAP/52DAP | 0.93837 | 0.79 |
55DAP/53DAP | 1.39127 | 0.16 |
57DAP/55DAP | 0.92829 | 0.698 |
62DAP/57DAP | 1.15141 | 1 |
68DAP/62DAP | 1.08021 | 0.897 |
68DAP/14DAP | 0.78835 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.08052 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.14757 | 0.113 |
Mature Green Tomato/Ripe Tomato | 0.6613 | 0.086 |
Immature Eggplant/Mature Eggplant | 1.55743 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.5589 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.86157 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.10046 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.75989 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.31921 | |
4-3-2/M82 | 1.19938 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.88505 | |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.33083 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.64019 | |
IL2-6/WTpooled | 1.14209 | 0.659 |
IL7-5/WTpooled | 0.91734 | |
IL7-3/WTpooled | 1.1592 | 1 |
IL12-4/WTpooled | 1.24929 | 0.532 |
IL1-4/WTpooled | 0.88331 | 0.834 |
WT/WTpooled | 0.97135 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.07969 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.86144 | 1 |
DC3000/delta hrp 6h | 1.06805 | 1 |
DC3000/delta hrp 12h | 0.99833 | 1 |
DC3000/delta hrp 24h | 0.93836 | 0.607 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.44293 | 0.229 |
DC3000 delta B/DC3000 delta AB | 1.18841 | 0.256 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02722 | 1 |
Exp 36h | 0.94601 | 0.749 |
Exp 60h | 1.02394 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00773 | 1 |
Var 0h | 0.49357 | 1 |
Var 12h I row2-row1 | 0.92778 | 0.565 |
Var 12h NI row2-row1 | 1.00735 | 1 |
Var 36h I row2-row1 | 1.1167 | 0.601 |
Var 36h NI row2-row1 | 0.95524 | 0.61 |
Var 60h I row2-row1 | 0.84294 | 0.439 |
Var 60h NI row2-row1 | 0.91666 | 0.756 |
Time course 0hI-0hNI | 1.00426 | 0.867 |
Time course 12hI-12hNI | 1.02026 | 0.811 |
Time course 36hI-36hNI | 1.16939 | 0.007 |
Time course 60hI-60hNI | 1.13892 | 0.042 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.90079 | 0.3 |
transgenic ySAMdc/azygous control (breaker) | 1.44651 | 1 |
transgenic ySAMdc/azygous control (red) | 1.02541 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02344 | 0.317 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.38712 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02604 | 1 |
Manapal/WT (break) | 0.8573 | 1 |
Manapal/WT (red) | 1.50281 | 0.222 |
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