Expression of 1-1-3.2.16.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.150340.709
27DAP/17DAP1.053851
39DAP/27DAP1.55330.176
41DAP/39DAP1.01470.69
42DAP/41DAP0.995551
43DAP/42DAP1.13141
47DAP/43DAP1.400650.442
52DAP/47DAP1.052810.916
57DAP/52DAP1.265270.904

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.931980.224
17DAP/reference0.931680.097
27DAP/reference0.981920.623
39DAP/reference0.975280.704
41DAP/reference0.956630.341
42DAP/reference0.994920.531
43DAP/reference1.027860.758
47DAP/reference1.018580.817
52DAP/reference0.986980.58
57DAP/reference1.106470.019

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.067241
27DAP/17DAP0.916130.684
39DAP/27DAP0.926350.536
41DAP/39DAP0.958580.923
42DAP/41DAP1.077820.719
43DAP/42DAP1.049550.554
47DAP/43DAP1.009591
52DAP/47DAP1.119440.681
57DAP/52DAP1.064980.662
57DAP/7DAP1.034691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.174170.173
17DAP/reference1.534190.025
27DAP/reference1.414640.007
39DAP/reference1.459980.044
41DAP/reference1.345370.104
42DAP/reference1.523550.009
43DAP/reference1.449790.035
47DAP/reference1.378590.037
52DAP/reference1.57170.007
57DAP/reference1.701290.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.902820.231
17DAP/reference0.947930.214
27DAP/reference1.129540.192
39DAP/reference0.976290.485
41DAP/reference1.028180.944
42DAP/reference1.029280.969
43DAP/reference0.850760.201
47DAP/reference0.98830.487
52DAP/reference0.921590.012
57DAP/reference0.825150.021

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.524390.019
17DAP/reference1.20620.17
27DAP/reference1.550910.016
39DAP/reference1.456340.007
41DAP/reference1.572140.016
42DAP/reference1.333750.038
43DAP/reference1.635480.022
47DAP/reference1.167410.085
52DAP/reference1.637410.086
57DAP/reference1.460620.038

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.187420.735
26DAP/20DAP0.966341
34DAP/26DAP1.234340.542
51DAP/34DAP1.126920.627
52DAP/51DAP1.254640.253
53DAP/52DAP0.938370.79
55DAP/53DAP1.391270.16
57DAP/55DAP0.928290.698
62DAP/57DAP1.151411
68DAP/62DAP1.080210.897
68DAP/14DAP0.788350.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.080521

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.147570.113
Mature Green Tomato/Ripe Tomato0.66130.086
Immature Eggplant/Mature Eggplant1.557430.05
Ripe Pepper/Ripe Tomato0.55890.224
Mature Eggplant/Ripe Tomato0.861571

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.10046
12-2/M82N/AN/A
12-4/M821.75989
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.31921
4-3-2/M821.199381
4-3/M82N/AN/A
5-3/M820.88505
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.330831

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.64019
IL2-6/WTpooled1.142090.659
IL7-5/WTpooled0.91734
IL7-3/WTpooled1.15921
IL12-4/WTpooled1.249290.532
IL1-4/WTpooled0.883310.834
WT/WTpooled0.971351

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.079691

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.861441
DC3000/delta hrp 6h1.068051
DC3000/delta hrp 12h0.998331
DC3000/delta hrp 24h0.938360.607

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.442930.229
DC3000 delta B/DC3000 delta AB1.188410.256

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.027221
Exp 36h0.946010.749
Exp 60h1.023941

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.007731
Var 0h0.493571
Var 12h I row2-row10.927780.565
Var 12h NI row2-row11.007351
Var 36h I row2-row11.11670.601
Var 36h NI row2-row10.955240.61
Var 60h I row2-row10.842940.439
Var 60h NI row2-row10.916660.756
Time course 0hI-0hNI1.004260.867
Time course 12hI-12hNI1.020260.811
Time course 36hI-36hNI1.169390.007
Time course 60hI-60hNI1.138920.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.900790.3
transgenic ySAMdc/azygous control (breaker)1.446511
transgenic ySAMdc/azygous control (red)1.025410.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.023440.317

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.387120.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.026041
Manapal/WT (break)0.85731
Manapal/WT (red)1.502810.222