Expression of 1-1-3.2.17.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.349060.588
27DAP/17DAP1.211130.809
39DAP/27DAP1.054480.876
41DAP/39DAP0.963120.726
42DAP/41DAP1.252320.419
43DAP/42DAP0.95110.864
47DAP/43DAP1.149550.727
52DAP/47DAP0.848010.607
57DAP/52DAP1.178020.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.055130.96
17DAP/reference1.269050.048
27DAP/reference1.337470.069
39DAP/reference1.03990.664
41DAP/reference1.385470.014
42DAP/reference1.165080.08
43DAP/reference1.053960.569
47DAP/reference1.126060.075
52DAP/reference1.370410.014
57DAP/reference0.99720.671

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.850460.194
27DAP/17DAP0.953810.854
39DAP/27DAP1.165180.27
41DAP/39DAP0.955040.729
42DAP/41DAP1.025940.976
43DAP/42DAP1.104680.027
47DAP/43DAP1.033380.848
52DAP/47DAP0.969220.868
57DAP/52DAP1.068730.606
57DAP/7DAP0.8891

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.939420.445
17DAP/reference0.755090.012
27DAP/reference0.885650.088
39DAP/reference1.128620.314
41DAP/reference1.003410.811
42DAP/reference0.789080.1
43DAP/reference0.928460.334
47DAP/reference0.969630.671
52DAP/reference0.965680.398
57DAP/reference1.007150.549

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.210410.612
17DAP/reference1.117250.426
27DAP/reference1.248360.373
39DAP/reference1.12140.093
41DAP/reference1.172390.372
42DAP/reference1.218210.17
43DAP/reference0.890280.269
47DAP/reference1.045740.795
52DAP/reference1.084370.702
57DAP/reference0.917610.384

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.890.169
17DAP/reference1.04181
27DAP/reference0.771680.049
39DAP/reference0.967240.504
41DAP/reference0.976120.618
42DAP/reference0.969210.671
43DAP/reference1.692030.022
47DAP/reference1.073481
52DAP/reference1.289690.252
57DAP/reference1.02280.856

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.05747
26DAP/20DAP0.991871
34DAP/26DAP1.129960.542
51DAP/34DAP1.078480.654
52DAP/51DAP0.913671
53DAP/52DAP1.133250.688
55DAP/53DAP0.933080.604
57DAP/55DAP0.939630.698
62DAP/57DAP1.136810.8
68DAP/62DAP1.00540.885
68DAP/14DAP0.920681

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.977370.607

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.933420.611
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.29105
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.206430.508
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.15355
7-2/M82N/AN/A
9-3-2/M820.83211

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.99031
IL7-5/WTpooled1.26621
IL7-3/WTpooled0.808220.31
IL12-4/WTpooled0.974071
IL1-4/WTpooled0.945190.699
WT/WTpooled1.049041

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.158031

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.80291
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.949090.293
DC3000 delta B/DC3000 delta AB1.108580.412

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.016771
Var 0h0.966631
Var 12h I row2-row11.275960.544
Var 12h NI row2-row10.985870.906
Var 36h I row2-row10.838771
Var 36h NI row2-row10.936520.61
Var 60h I row2-row11.047320.543
Var 60h NI row2-row11.158220.904
Time course 0hI-0hNI1.020210.852
Time course 12hI-12hNI1.037470.714
Time course 36hI-36hNI0.944210.344
Time course 60hI-60hNI0.7230.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.472151

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.807550.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A