Expression of 1-1-3.2.17.11
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.34906 | 0.588 |
27DAP/17DAP | 1.21113 | 0.809 |
39DAP/27DAP | 1.05448 | 0.876 |
41DAP/39DAP | 0.96312 | 0.726 |
42DAP/41DAP | 1.25232 | 0.419 |
43DAP/42DAP | 0.9511 | 0.864 |
47DAP/43DAP | 1.14955 | 0.727 |
52DAP/47DAP | 0.84801 | 0.607 |
57DAP/52DAP | 1.17802 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05513 | 0.96 |
17DAP/reference | 1.26905 | 0.048 |
27DAP/reference | 1.33747 | 0.069 |
39DAP/reference | 1.0399 | 0.664 |
41DAP/reference | 1.38547 | 0.014 |
42DAP/reference | 1.16508 | 0.08 |
43DAP/reference | 1.05396 | 0.569 |
47DAP/reference | 1.12606 | 0.075 |
52DAP/reference | 1.37041 | 0.014 |
57DAP/reference | 0.9972 | 0.671 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85046 | 0.194 |
27DAP/17DAP | 0.95381 | 0.854 |
39DAP/27DAP | 1.16518 | 0.27 |
41DAP/39DAP | 0.95504 | 0.729 |
42DAP/41DAP | 1.02594 | 0.976 |
43DAP/42DAP | 1.10468 | 0.027 |
47DAP/43DAP | 1.03338 | 0.848 |
52DAP/47DAP | 0.96922 | 0.868 |
57DAP/52DAP | 1.06873 | 0.606 |
57DAP/7DAP | 0.889 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93942 | 0.445 |
17DAP/reference | 0.75509 | 0.012 |
27DAP/reference | 0.88565 | 0.088 |
39DAP/reference | 1.12862 | 0.314 |
41DAP/reference | 1.00341 | 0.811 |
42DAP/reference | 0.78908 | 0.1 |
43DAP/reference | 0.92846 | 0.334 |
47DAP/reference | 0.96963 | 0.671 |
52DAP/reference | 0.96568 | 0.398 |
57DAP/reference | 1.00715 | 0.549 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21041 | 0.612 |
17DAP/reference | 1.11725 | 0.426 |
27DAP/reference | 1.24836 | 0.373 |
39DAP/reference | 1.1214 | 0.093 |
41DAP/reference | 1.17239 | 0.372 |
42DAP/reference | 1.21821 | 0.17 |
43DAP/reference | 0.89028 | 0.269 |
47DAP/reference | 1.04574 | 0.795 |
52DAP/reference | 1.08437 | 0.702 |
57DAP/reference | 0.91761 | 0.384 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89 | 0.169 |
17DAP/reference | 1.0418 | 1 |
27DAP/reference | 0.77168 | 0.049 |
39DAP/reference | 0.96724 | 0.504 |
41DAP/reference | 0.97612 | 0.618 |
42DAP/reference | 0.96921 | 0.671 |
43DAP/reference | 1.69203 | 0.022 |
47DAP/reference | 1.07348 | 1 |
52DAP/reference | 1.28969 | 0.252 |
57DAP/reference | 1.0228 | 0.856 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05747 | |
26DAP/20DAP | 0.99187 | 1 |
34DAP/26DAP | 1.12996 | 0.542 |
51DAP/34DAP | 1.07848 | 0.654 |
52DAP/51DAP | 0.91367 | 1 |
53DAP/52DAP | 1.13325 | 0.688 |
55DAP/53DAP | 0.93308 | 0.604 |
57DAP/55DAP | 0.93963 | 0.698 |
62DAP/57DAP | 1.13681 | 0.8 |
68DAP/62DAP | 1.0054 | 0.885 |
68DAP/14DAP | 0.92068 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97737 | 0.607 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.93342 | 0.611 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.29105 | |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.20643 | 0.508 |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.15355 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.83211 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.9903 | 1 |
IL7-5/WTpooled | 1.26621 | |
IL7-3/WTpooled | 0.80822 | 0.31 |
IL12-4/WTpooled | 0.97407 | 1 |
IL1-4/WTpooled | 0.94519 | 0.699 |
WT/WTpooled | 1.04904 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.15803 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.8029 | 1 |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.94909 | 0.293 |
DC3000 delta B/DC3000 delta AB | 1.10858 | 0.412 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01677 | 1 |
Var 0h | 0.96663 | 1 |
Var 12h I row2-row1 | 1.27596 | 0.544 |
Var 12h NI row2-row1 | 0.98587 | 0.906 |
Var 36h I row2-row1 | 0.83877 | 1 |
Var 36h NI row2-row1 | 0.93652 | 0.61 |
Var 60h I row2-row1 | 1.04732 | 0.543 |
Var 60h NI row2-row1 | 1.15822 | 0.904 |
Time course 0hI-0hNI | 1.02021 | 0.852 |
Time course 12hI-12hNI | 1.03747 | 0.714 |
Time course 36hI-36hNI | 0.94421 | 0.344 |
Time course 60hI-60hNI | 0.723 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.47215 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.80755 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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