Expression of 1-1-3.2.17.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79607 | 0.137 |
27DAP/17DAP | 1.3502 | 0.798 |
39DAP/27DAP | 1.42932 | 1 |
41DAP/39DAP | 1.93085 | 0.185 |
42DAP/41DAP | 3.22439 | 0.021 |
43DAP/42DAP | 3.06316 | 0.491 |
47DAP/43DAP | 1.03191 | 0.999 |
52DAP/47DAP | 0.54632 | 0.072 |
57DAP/52DAP | 1.63404 | 0.892 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3054 | 0.48 |
17DAP/reference | 0.9813 | 0.737 |
27DAP/reference | 1.31954 | 0.252 |
39DAP/reference | 1.05276 | 0.679 |
41DAP/reference | 0.98825 | 0.814 |
42DAP/reference | 1.30824 | 0.014 |
43DAP/reference | 0.98254 | 0.728 |
47DAP/reference | 1.29377 | 0.081 |
52DAP/reference | 1.92814 | 0.011 |
57DAP/reference | 1.48777 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90276 | 0.509 |
27DAP/17DAP | 0.99087 | 0.943 |
39DAP/27DAP | 1.25098 | 0.151 |
41DAP/39DAP | 0.81067 | 0.412 |
42DAP/41DAP | 1.33411 | 0.172 |
43DAP/42DAP | 1.63601 | 0.018 |
47DAP/43DAP | 1.10088 | 0.857 |
52DAP/47DAP | 0.83391 | 0.334 |
57DAP/52DAP | 0.95748 | 0.726 |
57DAP/7DAP | 1.22285 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9033 | 0.296 |
17DAP/reference | 0.76139 | 0.012 |
27DAP/reference | 0.72355 | 0.01 |
39DAP/reference | 0.90214 | 0.146 |
41DAP/reference | 0.8488 | 0.223 |
42DAP/reference | 0.70769 | 0.017 |
43DAP/reference | 0.99813 | 0.665 |
47DAP/reference | 0.98163 | 0.671 |
52DAP/reference | 0.80029 | 0.09 |
57DAP/reference | 0.83165 | 0.032 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07855 | 0.93 |
17DAP/reference | 0.88819 | 0.245 |
27DAP/reference | 0.98793 | 0.686 |
39DAP/reference | 1.18432 | 0.588 |
41DAP/reference | 1.31066 | 0.031 |
42DAP/reference | 1.23351 | 0.18 |
43DAP/reference | 0.91631 | 0.277 |
47DAP/reference | 1.2362 | 0.076 |
52DAP/reference | 1.21854 | 0.393 |
57DAP/reference | 0.95072 | 0.519 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83513 | 0.038 |
17DAP/reference | 0.90256 | 0.3 |
27DAP/reference | 0.7385 | 0.035 |
39DAP/reference | 0.80469 | 0.046 |
41DAP/reference | 0.97202 | 0.56 |
42DAP/reference | 0.87328 | 0.059 |
43DAP/reference | 1.01697 | 0.685 |
47DAP/reference | 1.34518 | 0.133 |
52DAP/reference | 0.88293 | 0.455 |
57DAP/reference | 1.44906 | 0.041 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.90941 | 1 |
26DAP/20DAP | 0.82976 | 0.512 |
34DAP/26DAP | 2.04971 | 0.819 |
51DAP/34DAP | 1.7566 | 0.565 |
52DAP/51DAP | 1.9377 | |
53DAP/52DAP | 0.9668 | 0.891 |
55DAP/53DAP | 1.85497 | 0.252 |
57DAP/55DAP | 0.85775 | 0.386 |
62DAP/57DAP | 1.37143 | 0.445 |
68DAP/62DAP | 2.18609 | 0.066 |
68DAP/14DAP | 4.11203 | 0.366 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.38073 | 0.087 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.38132 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.02385 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.85907 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.08025 | |
4-3-2/M82 | 1.03612 | 1 |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.93011 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.06292 | 0.788 |
IL7-5/WTpooled | 0.5466 | |
IL7-3/WTpooled | 0.90987 | 1 |
IL12-4/WTpooled | 0.97823 | 1 |
IL1-4/WTpooled | 0.99924 | 1 |
WT/WTpooled | 1.00644 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.89288 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05386 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.00742 | 1 |
DC3000/delta hrp 24h | 0.40956 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.2063 | 0.598 |
DC3000 delta B/DC3000 delta AB | 2.074 | 0.079 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.22508 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.2335 | 0.22 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97714 | 1 |
Var 0h | 1.45269 | 0.936 |
Var 12h I row2-row1 | 0.94344 | 0.627 |
Var 12h NI row2-row1 | 1.37353 | 0.34 |
Var 36h I row2-row1 | 0.92582 | 1 |
Var 36h NI row2-row1 | 0.99332 | 0.852 |
Var 60h I row2-row1 | 0.62348 | 0.374 |
Var 60h NI row2-row1 | 0.92954 | 1 |
Time course 0hI-0hNI | 1.19786 | 0.451 |
Time course 12hI-12hNI | 0.84914 | 0.163 |
Time course 36hI-36hNI | 1.30523 | 0.128 |
Time course 60hI-60hNI | 2.29118 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91383 | 0.662 |
transgenic ySAMdc/azygous control (breaker) | 0.79283 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.92337 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.89875 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.11062 | 0.307 |
Manapal/WT (break) | 1.04992 | 1 |
Manapal/WT (red) | 1.03735 | 1 |
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