Expression of 1-1-3.2.17.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.796070.137
27DAP/17DAP1.35020.798
39DAP/27DAP1.429321
41DAP/39DAP1.930850.185
42DAP/41DAP3.224390.021
43DAP/42DAP3.063160.491
47DAP/43DAP1.031910.999
52DAP/47DAP0.546320.072
57DAP/52DAP1.634040.892

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.30540.48
17DAP/reference0.98130.737
27DAP/reference1.319540.252
39DAP/reference1.052760.679
41DAP/reference0.988250.814
42DAP/reference1.308240.014
43DAP/reference0.982540.728
47DAP/reference1.293770.081
52DAP/reference1.928140.011
57DAP/reference1.487770.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.902760.509
27DAP/17DAP0.990870.943
39DAP/27DAP1.250980.151
41DAP/39DAP0.810670.412
42DAP/41DAP1.334110.172
43DAP/42DAP1.636010.018
47DAP/43DAP1.100880.857
52DAP/47DAP0.833910.334
57DAP/52DAP0.957480.726
57DAP/7DAP1.222851

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.90330.296
17DAP/reference0.761390.012
27DAP/reference0.723550.01
39DAP/reference0.902140.146
41DAP/reference0.84880.223
42DAP/reference0.707690.017
43DAP/reference0.998130.665
47DAP/reference0.981630.671
52DAP/reference0.800290.09
57DAP/reference0.831650.032

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.078550.93
17DAP/reference0.888190.245
27DAP/reference0.987930.686
39DAP/reference1.184320.588
41DAP/reference1.310660.031
42DAP/reference1.233510.18
43DAP/reference0.916310.277
47DAP/reference1.23620.076
52DAP/reference1.218540.393
57DAP/reference0.950720.519

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.835130.038
17DAP/reference0.902560.3
27DAP/reference0.73850.035
39DAP/reference0.804690.046
41DAP/reference0.972020.56
42DAP/reference0.873280.059
43DAP/reference1.016970.685
47DAP/reference1.345180.133
52DAP/reference0.882930.455
57DAP/reference1.449060.041

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.909411
26DAP/20DAP0.829760.512
34DAP/26DAP2.049710.819
51DAP/34DAP1.75660.565
52DAP/51DAP1.9377
53DAP/52DAP0.96680.891
55DAP/53DAP1.854970.252
57DAP/55DAP0.857750.386
62DAP/57DAP1.371430.445
68DAP/62DAP2.186090.066
68DAP/14DAP4.112030.366

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.380730.087

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.381320.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.02385
12-2/M82N/AN/A
12-4/M821.85907
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.08025
4-3-2/M821.036121
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M820.93011
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.062920.788
IL7-5/WTpooled0.5466
IL7-3/WTpooled0.909871
IL12-4/WTpooled0.978231
IL1-4/WTpooled0.999241
WT/WTpooled1.006441

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.892880.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.053861
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.007421
DC3000/delta hrp 24h0.409560.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.20630.598
DC3000 delta B/DC3000 delta AB2.0740.079

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.225081
Exp 36hN/AN/A
Exp 60h1.23350.22

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977141
Var 0h1.452690.936
Var 12h I row2-row10.943440.627
Var 12h NI row2-row11.373530.34
Var 36h I row2-row10.925821
Var 36h NI row2-row10.993320.852
Var 60h I row2-row10.623480.374
Var 60h NI row2-row10.929541
Time course 0hI-0hNI1.197860.451
Time course 12hI-12hNI0.849140.163
Time course 36hI-36hNI1.305230.128
Time course 60hI-60hNI2.291180.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.913830.662
transgenic ySAMdc/azygous control (breaker)0.792830.251
transgenic ySAMdc/azygous control (red)0.923371

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.898750.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.110620.307
Manapal/WT (break)1.049921
Manapal/WT (red)1.037351