Expression of 1-1-3.2.17.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.292460.205
27DAP/17DAP1.049260.91
39DAP/27DAP1.166880.643
41DAP/39DAP1.028460.946
42DAP/41DAP1.20870.871
43DAP/42DAP1.237290.785
47DAP/43DAP1.537610.555
52DAP/47DAP1.084810.934
57DAP/52DAP1.016890.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.320480.179
17DAP/reference1.342690.02
27DAP/reference1.16950.179
39DAP/reference1.224990.122
41DAP/reference1.581910.012
42DAP/reference1.09150.072
43DAP/reference1.055450.866
47DAP/reference1.107350.318
52DAP/reference1.066140.633
57DAP/reference0.848190.049

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.043650.662
27DAP/17DAP1.02620.909
39DAP/27DAP1.021150.707
41DAP/39DAP0.998611
42DAP/41DAP1.020.947
43DAP/42DAP1.029270.664
47DAP/43DAP1.03010.678
52DAP/47DAP1.022870.919
57DAP/52DAP0.993550.845
57DAP/7DAP1.157691

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.959850.157
17DAP/reference0.947010.021
27DAP/reference0.968220.071
39DAP/reference0.969550.073
41DAP/reference0.94280.032
42DAP/reference0.943960.038
43DAP/reference0.934560.026
47DAP/reference1.067240.996
52DAP/reference0.899160.043
57DAP/reference0.920730.018

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.952280.592
17DAP/reference1.438230.03
27DAP/reference1.197510.116
39DAP/reference1.316430.087
41DAP/reference1.137140.129
42DAP/reference0.979540.534
43DAP/reference1.236110.142
47DAP/reference1.112790.095
52DAP/reference1.194860.471
57DAP/reference1.348590.054

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.994490.653
17DAP/reference1.051690.253
27DAP/reference0.967020.147
39DAP/reference0.986330.544
41DAP/reference1.011251
42DAP/reference1.01510.979
43DAP/reference1.128430.474
47DAP/reference1.076070.61
52DAP/reference0.916380.211
57DAP/reference0.995780.572

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.4749
26DAP/20DAP0.926320.244
34DAP/26DAP0.972080.893
51DAP/34DAP0.999570.96
52DAP/51DAP1.046690.638
53DAP/52DAP1.100350.274
55DAP/53DAP0.992720.886
57DAP/55DAP1.166580.818
62DAP/57DAP1.209340.185
68DAP/62DAP0.884040.641
68DAP/14DAP1.1368

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.027650.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.651250.095
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato2.31956
Mature Eggplant/Ripe Tomato3.087930.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.964440.944
1-1-2/M821.041741
12-2/M82N/AN/A
12-4/M820.876680.282
1-3/M82N/AN/A
2-1-1/M821.19203
2-1/M82N/AN/A
2-6/M821.1235
3-2/M82N/AN/A
4-1-1/M820.948411
4-1/M820.76761
4-3-2/M821.33899
4-3/M82N/AN/A
5-3/M820.963741
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.009741
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.804420.321
IL2-6/WTpooled0.881731
IL7-5/WTpooled0.508590.427
IL7-3/WTpooled0.669620.294
IL12-4/WTpooled0.799930.71
IL1-4/WTpooled0.760190.457
WT/WTpooled1.077921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.849590.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.997681
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.775451
DC3000/delta hrp 24h1.245150.103

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.034610.333
DC3000 delta B/DC3000 delta AB0.992171

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.0071
Var 0h1.238260.421
Var 12h I row2-row11.030040.692
Var 12h NI row2-row11.051981
Var 36h I row2-row11.083811
Var 36h NI row2-row10.92640.478
Var 60h I row2-row11.156660.562
Var 60h NI row2-row10.954180.977
Time course 0hI-0hNI1.089930.63
Time course 12hI-12hNI1.02470.811
Time course 36hI-36hNI1.01440.975
Time course 60hI-60hNI1.120680.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.827591
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.321481

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.665890.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.189790.413