Expression of 1-1-3.2.17.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.29246 | 0.205 |
27DAP/17DAP | 1.04926 | 0.91 |
39DAP/27DAP | 1.16688 | 0.643 |
41DAP/39DAP | 1.02846 | 0.946 |
42DAP/41DAP | 1.2087 | 0.871 |
43DAP/42DAP | 1.23729 | 0.785 |
47DAP/43DAP | 1.53761 | 0.555 |
52DAP/47DAP | 1.08481 | 0.934 |
57DAP/52DAP | 1.01689 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32048 | 0.179 |
17DAP/reference | 1.34269 | 0.02 |
27DAP/reference | 1.1695 | 0.179 |
39DAP/reference | 1.22499 | 0.122 |
41DAP/reference | 1.58191 | 0.012 |
42DAP/reference | 1.0915 | 0.072 |
43DAP/reference | 1.05545 | 0.866 |
47DAP/reference | 1.10735 | 0.318 |
52DAP/reference | 1.06614 | 0.633 |
57DAP/reference | 0.84819 | 0.049 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04365 | 0.662 |
27DAP/17DAP | 1.0262 | 0.909 |
39DAP/27DAP | 1.02115 | 0.707 |
41DAP/39DAP | 0.99861 | 1 |
42DAP/41DAP | 1.02 | 0.947 |
43DAP/42DAP | 1.02927 | 0.664 |
47DAP/43DAP | 1.0301 | 0.678 |
52DAP/47DAP | 1.02287 | 0.919 |
57DAP/52DAP | 0.99355 | 0.845 |
57DAP/7DAP | 1.15769 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95985 | 0.157 |
17DAP/reference | 0.94701 | 0.021 |
27DAP/reference | 0.96822 | 0.071 |
39DAP/reference | 0.96955 | 0.073 |
41DAP/reference | 0.9428 | 0.032 |
42DAP/reference | 0.94396 | 0.038 |
43DAP/reference | 0.93456 | 0.026 |
47DAP/reference | 1.06724 | 0.996 |
52DAP/reference | 0.89916 | 0.043 |
57DAP/reference | 0.92073 | 0.018 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95228 | 0.592 |
17DAP/reference | 1.43823 | 0.03 |
27DAP/reference | 1.19751 | 0.116 |
39DAP/reference | 1.31643 | 0.087 |
41DAP/reference | 1.13714 | 0.129 |
42DAP/reference | 0.97954 | 0.534 |
43DAP/reference | 1.23611 | 0.142 |
47DAP/reference | 1.11279 | 0.095 |
52DAP/reference | 1.19486 | 0.471 |
57DAP/reference | 1.34859 | 0.054 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99449 | 0.653 |
17DAP/reference | 1.05169 | 0.253 |
27DAP/reference | 0.96702 | 0.147 |
39DAP/reference | 0.98633 | 0.544 |
41DAP/reference | 1.01125 | 1 |
42DAP/reference | 1.0151 | 0.979 |
43DAP/reference | 1.12843 | 0.474 |
47DAP/reference | 1.07607 | 0.61 |
52DAP/reference | 0.91638 | 0.211 |
57DAP/reference | 0.99578 | 0.572 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.4749 | |
26DAP/20DAP | 0.92632 | 0.244 |
34DAP/26DAP | 0.97208 | 0.893 |
51DAP/34DAP | 0.99957 | 0.96 |
52DAP/51DAP | 1.04669 | 0.638 |
53DAP/52DAP | 1.10035 | 0.274 |
55DAP/53DAP | 0.99272 | 0.886 |
57DAP/55DAP | 1.16658 | 0.818 |
62DAP/57DAP | 1.20934 | 0.185 |
68DAP/62DAP | 0.88404 | 0.641 |
68DAP/14DAP | 1.1368 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02765 | 0.74 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.65125 | 0.095 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 2.31956 | |
Mature Eggplant/Ripe Tomato | 3.08793 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96444 | 0.944 |
1-1-2/M82 | 1.04174 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.87668 | 0.282 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.19203 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.1235 | |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 0.94841 | 1 |
4-1/M82 | 0.76761 | |
4-3-2/M82 | 1.33899 | |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.96374 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.00974 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.80442 | 0.321 |
IL2-6/WTpooled | 0.88173 | 1 |
IL7-5/WTpooled | 0.50859 | 0.427 |
IL7-3/WTpooled | 0.66962 | 0.294 |
IL12-4/WTpooled | 0.79993 | 0.71 |
IL1-4/WTpooled | 0.76019 | 0.457 |
WT/WTpooled | 1.07792 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.84959 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99768 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.77545 | 1 |
DC3000/delta hrp 24h | 1.24515 | 0.103 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.03461 | 0.333 |
DC3000 delta B/DC3000 delta AB | 0.99217 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.007 | 1 |
Var 0h | 1.23826 | 0.421 |
Var 12h I row2-row1 | 1.03004 | 0.692 |
Var 12h NI row2-row1 | 1.05198 | 1 |
Var 36h I row2-row1 | 1.08381 | 1 |
Var 36h NI row2-row1 | 0.9264 | 0.478 |
Var 60h I row2-row1 | 1.15666 | 0.562 |
Var 60h NI row2-row1 | 0.95418 | 0.977 |
Time course 0hI-0hNI | 1.08993 | 0.63 |
Time course 12hI-12hNI | 1.0247 | 0.811 |
Time course 36hI-36hNI | 1.0144 | 0.975 |
Time course 60hI-60hNI | 1.12068 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.82759 | 1 |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.32148 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.66589 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.18979 | 0.413 |
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