Expression of 1-1-3.2.17.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.7075 | 0.169 |
27DAP/17DAP | 0.84084 | 0.697 |
39DAP/27DAP | 0.77105 | 0.507 |
41DAP/39DAP | 2.19359 | 0.423 |
42DAP/41DAP | 1.62731 | 0.751 |
43DAP/42DAP | 1.60001 | 0.861 |
47DAP/43DAP | 1.35515 | 0.618 |
52DAP/47DAP | 1.13218 | 0.973 |
57DAP/52DAP | 1.80555 | 0.902 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04382 | 0.421 |
17DAP/reference | 1.02799 | 0.318 |
27DAP/reference | 0.96361 | 0.444 |
39DAP/reference | 0.98494 | 0.762 |
41DAP/reference | 1.01845 | 0.808 |
42DAP/reference | 0.99408 | 0.517 |
43DAP/reference | 1.03006 | 0.569 |
47DAP/reference | 1.0098 | 0.91 |
52DAP/reference | 1.10782 | 0.096 |
57DAP/reference | 0.99078 | 0.61 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89957 | 0.526 |
27DAP/17DAP | 0.8693 | 0.537 |
39DAP/27DAP | 1.15853 | 0.471 |
41DAP/39DAP | 1.15508 | 0.748 |
42DAP/41DAP | 0.9231 | 0.552 |
43DAP/42DAP | 0.96719 | 0.729 |
47DAP/43DAP | 1.06976 | 0.822 |
52DAP/47DAP | 0.96043 | 0.898 |
57DAP/52DAP | 0.89828 | 0.405 |
57DAP/7DAP | 0.74675 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9321 | 0.361 |
17DAP/reference | 0.65731 | 0.014 |
27DAP/reference | 0.65486 | 0.039 |
39DAP/reference | 0.89132 | 0.198 |
41DAP/reference | 1.2211 | 0.336 |
42DAP/reference | 0.91629 | 0.289 |
43DAP/reference | 0.91427 | 0.351 |
47DAP/reference | 0.97881 | 0.671 |
52DAP/reference | 0.96343 | 0.435 |
57DAP/reference | 1.06978 | 0.966 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15162 | 0.108 |
17DAP/reference | 0.92441 | 0.092 |
27DAP/reference | 1.00355 | 1 |
39DAP/reference | 0.92031 | 0.085 |
41DAP/reference | 0.98023 | 0.459 |
42DAP/reference | 0.90152 | 0.067 |
43DAP/reference | 0.91494 | 0.196 |
47DAP/reference | 0.97818 | 0.328 |
52DAP/reference | 0.9595 | 0.143 |
57DAP/reference | 0.90701 | 0.028 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.58567 | 0.135 |
17DAP/reference | 0.83636 | 0.221 |
27DAP/reference | 0.90333 | |
39DAP/reference | 1.05158 | 0.512 |
41DAP/reference | 0.68696 | 0.058 |
42DAP/reference | 0.76639 | 0.108 |
43DAP/reference | 0.96097 | 0.294 |
47DAP/reference | 1.00203 | 0.731 |
52DAP/reference | 1.14438 | 0.575 |
57DAP/reference | 1.02179 | 0.867 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0926 | 0.966 |
26DAP/20DAP | 0.9919 | 1 |
34DAP/26DAP | 0.92198 | 0.702 |
51DAP/34DAP | 0.69997 | 0.094 |
52DAP/51DAP | 0.86057 | 1 |
53DAP/52DAP | 1.49128 | 0.086 |
55DAP/53DAP | 1.22907 | 0.477 |
57DAP/55DAP | 1.35422 | 0.71 |
62DAP/57DAP | 0.98953 | 0.994 |
68DAP/62DAP | 1.07862 | 0.899 |
68DAP/14DAP | 1.01529 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.13041 | 0.821 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.20868 | 0.06 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 2.80307 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.69466 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.43525 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94811 | 0.736 |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 2.08878 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.0291 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.83746 | 0.381 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.44784 | 0.348 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.40616 | 1 |
IL12-4/WTpooled | 1.10602 | 0.839 |
IL1-4/WTpooled | 0.86325 | 0.699 |
WT/WTpooled | 1.12465 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06811 | 0.921 |
DC3000/delta hrp 6h | 1.04712 | 1 |
DC3000/delta hrp 12h | 0.91126 | 1 |
DC3000/delta hrp 24h | 1.11953 | 0.264 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 2.03694 | 0.298 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00495 | 1 |
Exp 36h | 1.26944 | 1 |
Exp 60h | 1.13207 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00955 | 1 |
Var 0h | 1.05075 | 0.98 |
Var 12h I row2-row1 | 0.96348 | 1 |
Var 12h NI row2-row1 | 0.79955 | 0.82 |
Var 36h I row2-row1 | 0.91043 | 1 |
Var 36h NI row2-row1 | 2.17901 | 1 |
Var 60h I row2-row1 | 0.56569 | |
Var 60h NI row2-row1 | 1.2972 | 1 |
Time course 0hI-0hNI | 1.08905 | 1 |
Time course 12hI-12hNI | 0.95051 | 0.87 |
Time course 36hI-36hNI | 0.94284 | 0.494 |
Time course 60hI-60hNI | 1.45351 | 0.069 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02345 | 0.511 |
transgenic ySAMdc/azygous control (breaker) | 0.71436 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.89732 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.87971 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86879 | 1 |
Manapal/WT (break) | 0.82041 | 1 |
Manapal/WT (red) | 0.83987 | 0.503 |
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