Expression of 1-1-3.2.18.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85932 | 0.26 |
27DAP/17DAP | 1.20039 | 0.793 |
39DAP/27DAP | 4.14583 | 0.165 |
41DAP/39DAP | 1.14174 | 0.788 |
42DAP/41DAP | 0.97184 | 1 |
43DAP/42DAP | 1.0601 | 1 |
47DAP/43DAP | 1.19218 | 0.756 |
52DAP/47DAP | 1.10751 | 0.906 |
57DAP/52DAP | 1.08829 | 0.974 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86418 | 0.051 |
17DAP/reference | 1.04691 | 0.546 |
27DAP/reference | 1.04961 | 0.548 |
39DAP/reference | 0.9837 | 0.779 |
41DAP/reference | 0.96492 | 0.667 |
42DAP/reference | 0.86277 | 0.015 |
43DAP/reference | 0.92064 | 0.316 |
47DAP/reference | 1.06178 | 0.215 |
52DAP/reference | 1.07228 | 0.695 |
57DAP/reference | 1.17407 | 0.332 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16086 | 0.398 |
27DAP/17DAP | 0.8654 | 0.39 |
39DAP/27DAP | 0.82847 | 0.227 |
41DAP/39DAP | 0.90328 | 0.662 |
42DAP/41DAP | 0.98431 | 0.784 |
43DAP/42DAP | 1.04953 | 0.664 |
47DAP/43DAP | 0.97593 | 0.911 |
52DAP/47DAP | 1.11833 | 0.823 |
57DAP/52DAP | 1.13174 | 0.471 |
57DAP/7DAP | 1.18388 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02756 | 0.843 |
17DAP/reference | 1.46721 | 0.042 |
27DAP/reference | 1.18247 | 0.698 |
39DAP/reference | 1.39469 | 0.05 |
41DAP/reference | 1.5413 | 0.08 |
42DAP/reference | 1.40728 | 0.008 |
43DAP/reference | 1.65433 | 0.007 |
47DAP/reference | 1.2353 | 0.182 |
52DAP/reference | 1.62797 | 0.015 |
57DAP/reference | 1.67543 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00092 | 0.93 |
17DAP/reference | 0.89121 | 0.223 |
27DAP/reference | 0.85928 | 0.22 |
39DAP/reference | 0.94111 | 0.348 |
41DAP/reference | 0.81338 | 0.035 |
42DAP/reference | 0.77876 | 0.067 |
43DAP/reference | 1.2045 | 0.462 |
47DAP/reference | 0.99806 | 0.643 |
52DAP/reference | 0.94766 | 0.433 |
57DAP/reference | 0.93302 | 0.278 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28235 | 0.106 |
17DAP/reference | 1.25941 | 0.347 |
27DAP/reference | 1.53476 | 0.02 |
39DAP/reference | 1.40602 | 0.021 |
41DAP/reference | 1.13899 | 0.239 |
42DAP/reference | 1.20728 | 0.424 |
43DAP/reference | 1.07385 | 1 |
47DAP/reference | 1.00251 | 0.687 |
52DAP/reference | 1.36635 | 0.225 |
57DAP/reference | 1.02721 | 0.753 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.33251 | 0.966 |
26DAP/20DAP | 1.11678 | 0.813 |
34DAP/26DAP | 1.59991 | 0.542 |
51DAP/34DAP | 1.20427 | 0.473 |
52DAP/51DAP | 1.05986 | 1 |
53DAP/52DAP | 0.80703 | 0.402 |
55DAP/53DAP | 1.66336 | 0.095 |
57DAP/55DAP | 1.04524 | 0.947 |
62DAP/57DAP | 1.17607 | 0.767 |
68DAP/62DAP | 1.07031 | 0.864 |
68DAP/14DAP | 1.60377 | 0.694 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.23523 | 0.391 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.24023 | 0.019 |
Immature Eggplant/Mature Eggplant | 1.38641 | |
Ripe Pepper/Ripe Tomato | 0.33903 | |
Mature Eggplant/Ripe Tomato | 1.66544 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.84582 | 0.536 |
1-1-2/M82 | 0.76331 | |
12-2/M82 | 0.92504 | 0.955 |
12-4/M82 | 1.29093 | |
1-3/M82 | 0.72763 | |
2-1-1/M82 | 1.04865 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.0859 | 0.695 |
3-2/M82 | 1.06027 | |
4-1-1/M82 | 0.95874 | 1 |
4-1/M82 | 1.24891 | |
4-3-2/M82 | 1.00403 | |
4-3/M82 | 0.89537 | |
5-3/M82 | 0.87157 | 0.642 |
6-2/M82 | 0.76676 | |
6-3/M82 | 0.98591 | 1 |
7-1/M82 | 0.95103 | |
7-2/M82 | 0.98937 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.50588 | |
IL7-5/WTpooled | 1.56413 | |
IL7-3/WTpooled | 1.10444 | 1 |
IL12-4/WTpooled | 1.18529 | 0.737 |
IL1-4/WTpooled | 0.93009 | 0.415 |
WT/WTpooled | 1.09513 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9004 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03594 | 1 |
DC3000/delta hrp 6h | 0.88991 | 0.95 |
DC3000/delta hrp 12h | 0.98468 | 1 |
DC3000/delta hrp 24h | 1.08451 | 0.502 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00891 | 1 |
Exp 36h | 1.12259 | 0.693 |
Exp 60h | 1.1591 | 0.221 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0692 | |
Var 0h | 0.7037 | 0.237 |
Var 12h I row2-row1 | 1.12144 | 0.283 |
Var 12h NI row2-row1 | 1.02508 | 1 |
Var 36h I row2-row1 | 0.9707 | 1 |
Var 36h NI row2-row1 | 0.82472 | 1 |
Var 60h I row2-row1 | 0.92852 | 0.293 |
Var 60h NI row2-row1 | 1.18149 | 0.904 |
Time course 0hI-0hNI | 1.09132 | 0.833 |
Time course 12hI-12hNI | 1.16727 | 0.779 |
Time course 36hI-36hNI | 1.26619 | 0.218 |
Time course 60hI-60hNI | 4.66411 | 0.029 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0484 | 0.339 |
transgenic ySAMdc/azygous control (breaker) | 1.19782 | 1 |
transgenic ySAMdc/azygous control (red) | 0.86835 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04043 | 0.163 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8329 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.72688 | 1 |
Manapal/WT (break) | 0.98883 | 1 |
Manapal/WT (red) | 0.83352 | 0.181 |
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