Expression of 1-1-3.2.18.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.859320.26
27DAP/17DAP1.200390.793
39DAP/27DAP4.145830.165
41DAP/39DAP1.141740.788
42DAP/41DAP0.971841
43DAP/42DAP1.06011
47DAP/43DAP1.192180.756
52DAP/47DAP1.107510.906
57DAP/52DAP1.088290.974

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.864180.051
17DAP/reference1.046910.546
27DAP/reference1.049610.548
39DAP/reference0.98370.779
41DAP/reference0.964920.667
42DAP/reference0.862770.015
43DAP/reference0.920640.316
47DAP/reference1.061780.215
52DAP/reference1.072280.695
57DAP/reference1.174070.332

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.160860.398
27DAP/17DAP0.86540.39
39DAP/27DAP0.828470.227
41DAP/39DAP0.903280.662
42DAP/41DAP0.984310.784
43DAP/42DAP1.049530.664
47DAP/43DAP0.975930.911
52DAP/47DAP1.118330.823
57DAP/52DAP1.131740.471
57DAP/7DAP1.183881

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.027560.843
17DAP/reference1.467210.042
27DAP/reference1.182470.698
39DAP/reference1.394690.05
41DAP/reference1.54130.08
42DAP/reference1.407280.008
43DAP/reference1.654330.007
47DAP/reference1.23530.182
52DAP/reference1.627970.015
57DAP/reference1.675430.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.000920.93
17DAP/reference0.891210.223
27DAP/reference0.859280.22
39DAP/reference0.941110.348
41DAP/reference0.813380.035
42DAP/reference0.778760.067
43DAP/reference1.20450.462
47DAP/reference0.998060.643
52DAP/reference0.947660.433
57DAP/reference0.933020.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.282350.106
17DAP/reference1.259410.347
27DAP/reference1.534760.02
39DAP/reference1.406020.021
41DAP/reference1.138990.239
42DAP/reference1.207280.424
43DAP/reference1.073851
47DAP/reference1.002510.687
52DAP/reference1.366350.225
57DAP/reference1.027210.753

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.332510.966
26DAP/20DAP1.116780.813
34DAP/26DAP1.599910.542
51DAP/34DAP1.204270.473
52DAP/51DAP1.059861
53DAP/52DAP0.807030.402
55DAP/53DAP1.663360.095
57DAP/55DAP1.045240.947
62DAP/57DAP1.176070.767
68DAP/62DAP1.070310.864
68DAP/14DAP1.603770.694

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.235230.391

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.240230.019
Immature Eggplant/Mature Eggplant1.38641
Ripe Pepper/Ripe Tomato0.33903
Mature Eggplant/Ripe Tomato1.665441

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.845820.536
1-1-2/M820.76331
12-2/M820.925040.955
12-4/M821.29093
1-3/M820.72763
2-1-1/M821.04865
2-1/M82N/AN/A
2-6/M821.08590.695
3-2/M821.06027
4-1-1/M820.958741
4-1/M821.24891
4-3-2/M821.00403
4-3/M820.89537
5-3/M820.871570.642
6-2/M820.76676
6-3/M820.985911
7-1/M820.95103
7-2/M820.989371
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.50588
IL7-5/WTpooled1.56413
IL7-3/WTpooled1.104441
IL12-4/WTpooled1.185290.737
IL1-4/WTpooled0.930090.415
WT/WTpooled1.095131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.90040.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.035941
DC3000/delta hrp 6h0.889910.95
DC3000/delta hrp 12h0.984681
DC3000/delta hrp 24h1.084510.502

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.008911
Exp 36h1.122590.693
Exp 60h1.15910.221

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.0692
Var 0h0.70370.237
Var 12h I row2-row11.121440.283
Var 12h NI row2-row11.025081
Var 36h I row2-row10.97071
Var 36h NI row2-row10.824721
Var 60h I row2-row10.928520.293
Var 60h NI row2-row11.181490.904
Time course 0hI-0hNI1.091320.833
Time course 12hI-12hNI1.167270.779
Time course 36hI-36hNI1.266190.218
Time course 60hI-60hNI4.664110.029

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.04840.339
transgenic ySAMdc/azygous control (breaker)1.197821
transgenic ySAMdc/azygous control (red)0.868351

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.040430.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.83290.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.726881
Manapal/WT (break)0.988831
Manapal/WT (red)0.833520.181