Expression of 1-1-3.2.18.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.542980.09
27DAP/17DAP1.113570.852
39DAP/27DAP1.331390.507
41DAP/39DAP1.166380.603
42DAP/41DAP1.006971
43DAP/42DAP1.527850.875
47DAP/43DAP1.15390.633
52DAP/47DAP1.003590.927
57DAP/52DAP1.074520.987

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.987870.601
17DAP/reference1.017280.606
27DAP/reference1.00580.981
39DAP/reference0.967030.381
41DAP/reference0.980210.667
42DAP/reference0.997390.608
43DAP/reference1.044620.382
47DAP/reference1.051070.275
52DAP/reference1.120240.011
57DAP/reference1.089210.091

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.044780.247
27DAP/17DAP0.97540.724
39DAP/27DAP1.021030.685
41DAP/39DAP1.013090.895
42DAP/41DAP0.962760.693
43DAP/42DAP1.023280.478
47DAP/43DAP1.000451
52DAP/47DAP0.979770.899
57DAP/52DAP0.991340.818
57DAP/7DAP1.046961

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.851740.138
17DAP/reference0.749370.013
27DAP/reference0.770520.013
39DAP/reference0.898360.056
41DAP/reference0.907820.16
42DAP/reference0.780150.014
43DAP/reference0.719340.01
47DAP/reference0.966970.671
52DAP/reference0.787550.024
57DAP/reference0.831280.054

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.950190.374
17DAP/reference0.966430.297
27DAP/reference0.929090.188
39DAP/reference1.019340.891
41DAP/reference1.08630.372
42DAP/reference0.980830.433
43DAP/reference0.87530.095
47DAP/reference0.982610.487
52DAP/reference1.023680.322
57DAP/reference0.846620.008

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.835870.057
17DAP/reference0.968780.601
27DAP/reference0.856270.067
39DAP/reference0.805070.092
41DAP/reference0.928360.331
42DAP/reference0.793950.028
43DAP/reference0.962510.503
47DAP/reference1.021691
52DAP/reference0.767890.166
57DAP/reference1.047040.41

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.938970.672
26DAP/20DAP1.036670.974
34DAP/26DAP1.018940.542
51DAP/34DAP1.056470.666
52DAP/51DAP0.974691
53DAP/52DAP1.014460.895
55DAP/53DAP0.958410.404
57DAP/55DAP1.223860.826
62DAP/57DAP0.795030.466
68DAP/62DAP1.148060.672
68DAP/14DAP1.155770.2

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.988950.774

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.204050.055
Mature Green Tomato/Ripe Tomato0.786080.226
Immature Eggplant/Mature Eggplant1.843160.05
Ripe Pepper/Ripe Tomato0.957661
Mature Eggplant/Ripe Tomato0.329240.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.014221
1-1-2/M820.969221
12-2/M820.92160.862
12-4/M820.948060.319
1-3/M821.061770.479
2-1-1/M820.985221
2-1/M821.534241
2-6/M820.884181
3-2/M821.19524
4-1-1/M820.997941
4-1/M820.91073
4-3-2/M821.01317
4-3/M820.98831
5-3/M821.026061
6-2/M821.064931
6-3/M821.059031
7-1/M82N/AN/A
7-2/M821.018091
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.30761
IL2-6/WTpooled1.132710.659
IL7-5/WTpooled0.707081
IL7-3/WTpooled0.816340.31
IL12-4/WTpooled0.965451
IL1-4/WTpooled0.90320.699
WT/WTpooled1.136381

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.981391

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.947571
DC3000/delta hrp 6h0.967680.95
DC3000/delta hrp 12h0.999681
DC3000/delta hrp 24h1.077060.347

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.094740.145
DC3000 delta B/DC3000 delta AB1.024870.601

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.908281
Exp 36h1.443830.693
Exp 60h1.380290.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.024251
Var 0h1.098190.98
Var 12h I row2-row11.602750.406
Var 12h NI row2-row11.028711
Var 36h I row2-row10.985111
Var 36h NI row2-row10.942420.706
Var 60h I row2-row11.03631
Var 60h NI row2-row10.951250.866
Time course 0hI-0hNI1.0280.867
Time course 12hI-12hNI1.075250.275
Time course 36hI-36hNI1.08910.07
Time course 60hI-60hNI1.529010.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.04020.482
transgenic ySAMdc/azygous control (breaker)0.911410.49
transgenic ySAMdc/azygous control (red)0.973941

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.969650.163

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.729590.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.693110.181