Expression of 1-1-3.2.18.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.54298 | 0.09 |
27DAP/17DAP | 1.11357 | 0.852 |
39DAP/27DAP | 1.33139 | 0.507 |
41DAP/39DAP | 1.16638 | 0.603 |
42DAP/41DAP | 1.00697 | 1 |
43DAP/42DAP | 1.52785 | 0.875 |
47DAP/43DAP | 1.1539 | 0.633 |
52DAP/47DAP | 1.00359 | 0.927 |
57DAP/52DAP | 1.07452 | 0.987 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98787 | 0.601 |
17DAP/reference | 1.01728 | 0.606 |
27DAP/reference | 1.0058 | 0.981 |
39DAP/reference | 0.96703 | 0.381 |
41DAP/reference | 0.98021 | 0.667 |
42DAP/reference | 0.99739 | 0.608 |
43DAP/reference | 1.04462 | 0.382 |
47DAP/reference | 1.05107 | 0.275 |
52DAP/reference | 1.12024 | 0.011 |
57DAP/reference | 1.08921 | 0.091 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04478 | 0.247 |
27DAP/17DAP | 0.9754 | 0.724 |
39DAP/27DAP | 1.02103 | 0.685 |
41DAP/39DAP | 1.01309 | 0.895 |
42DAP/41DAP | 0.96276 | 0.693 |
43DAP/42DAP | 1.02328 | 0.478 |
47DAP/43DAP | 1.00045 | 1 |
52DAP/47DAP | 0.97977 | 0.899 |
57DAP/52DAP | 0.99134 | 0.818 |
57DAP/7DAP | 1.04696 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85174 | 0.138 |
17DAP/reference | 0.74937 | 0.013 |
27DAP/reference | 0.77052 | 0.013 |
39DAP/reference | 0.89836 | 0.056 |
41DAP/reference | 0.90782 | 0.16 |
42DAP/reference | 0.78015 | 0.014 |
43DAP/reference | 0.71934 | 0.01 |
47DAP/reference | 0.96697 | 0.671 |
52DAP/reference | 0.78755 | 0.024 |
57DAP/reference | 0.83128 | 0.054 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95019 | 0.374 |
17DAP/reference | 0.96643 | 0.297 |
27DAP/reference | 0.92909 | 0.188 |
39DAP/reference | 1.01934 | 0.891 |
41DAP/reference | 1.0863 | 0.372 |
42DAP/reference | 0.98083 | 0.433 |
43DAP/reference | 0.8753 | 0.095 |
47DAP/reference | 0.98261 | 0.487 |
52DAP/reference | 1.02368 | 0.322 |
57DAP/reference | 0.84662 | 0.008 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83587 | 0.057 |
17DAP/reference | 0.96878 | 0.601 |
27DAP/reference | 0.85627 | 0.067 |
39DAP/reference | 0.80507 | 0.092 |
41DAP/reference | 0.92836 | 0.331 |
42DAP/reference | 0.79395 | 0.028 |
43DAP/reference | 0.96251 | 0.503 |
47DAP/reference | 1.02169 | 1 |
52DAP/reference | 0.76789 | 0.166 |
57DAP/reference | 1.04704 | 0.41 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93897 | 0.672 |
26DAP/20DAP | 1.03667 | 0.974 |
34DAP/26DAP | 1.01894 | 0.542 |
51DAP/34DAP | 1.05647 | 0.666 |
52DAP/51DAP | 0.97469 | 1 |
53DAP/52DAP | 1.01446 | 0.895 |
55DAP/53DAP | 0.95841 | 0.404 |
57DAP/55DAP | 1.22386 | 0.826 |
62DAP/57DAP | 0.79503 | 0.466 |
68DAP/62DAP | 1.14806 | 0.672 |
68DAP/14DAP | 1.15577 | 0.2 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98895 | 0.774 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.20405 | 0.055 |
Mature Green Tomato/Ripe Tomato | 0.78608 | 0.226 |
Immature Eggplant/Mature Eggplant | 1.84316 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.95766 | 1 |
Mature Eggplant/Ripe Tomato | 0.32924 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.01422 | 1 |
1-1-2/M82 | 0.96922 | 1 |
12-2/M82 | 0.9216 | 0.862 |
12-4/M82 | 0.94806 | 0.319 |
1-3/M82 | 1.06177 | 0.479 |
2-1-1/M82 | 0.98522 | 1 |
2-1/M82 | 1.53424 | 1 |
2-6/M82 | 0.88418 | 1 |
3-2/M82 | 1.19524 | |
4-1-1/M82 | 0.99794 | 1 |
4-1/M82 | 0.91073 | |
4-3-2/M82 | 1.01317 | |
4-3/M82 | 0.9883 | 1 |
5-3/M82 | 1.02606 | 1 |
6-2/M82 | 1.06493 | 1 |
6-3/M82 | 1.05903 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.01809 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.30761 | |
IL2-6/WTpooled | 1.13271 | 0.659 |
IL7-5/WTpooled | 0.70708 | 1 |
IL7-3/WTpooled | 0.81634 | 0.31 |
IL12-4/WTpooled | 0.96545 | 1 |
IL1-4/WTpooled | 0.9032 | 0.699 |
WT/WTpooled | 1.13638 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.98139 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94757 | 1 |
DC3000/delta hrp 6h | 0.96768 | 0.95 |
DC3000/delta hrp 12h | 0.99968 | 1 |
DC3000/delta hrp 24h | 1.07706 | 0.347 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.09474 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.02487 | 0.601 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90828 | 1 |
Exp 36h | 1.44383 | 0.693 |
Exp 60h | 1.38029 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02425 | 1 |
Var 0h | 1.09819 | 0.98 |
Var 12h I row2-row1 | 1.60275 | 0.406 |
Var 12h NI row2-row1 | 1.02871 | 1 |
Var 36h I row2-row1 | 0.98511 | 1 |
Var 36h NI row2-row1 | 0.94242 | 0.706 |
Var 60h I row2-row1 | 1.0363 | 1 |
Var 60h NI row2-row1 | 0.95125 | 0.866 |
Time course 0hI-0hNI | 1.028 | 0.867 |
Time course 12hI-12hNI | 1.07525 | 0.275 |
Time course 36hI-36hNI | 1.0891 | 0.07 |
Time course 60hI-60hNI | 1.52901 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0402 | 0.482 |
transgenic ySAMdc/azygous control (breaker) | 0.91141 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.97394 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96965 | 0.163 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.72959 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.69311 | 0.181 |
|
|