Expression of 1-1-3.2.18.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.170820.851
27DAP/17DAP1.098210.973
39DAP/27DAP0.901880.482
41DAP/39DAP1.081390.708
42DAP/41DAP0.809291
43DAP/42DAP1.118880.985
47DAP/43DAP1.033120.884
52DAP/47DAP0.922550.729
57DAP/52DAP0.988880.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.064850.32
17DAP/reference1.023770.874
27DAP/reference1.071440.285
39DAP/reference1.078310.229
41DAP/reference1.104980.393
42DAP/reference0.965890.278
43DAP/reference0.889550.118
47DAP/reference1.030420.752
52DAP/reference1.136670.272
57DAP/reference1.049870.662

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.967360.663
27DAP/17DAP1.103781
39DAP/27DAP0.986740.932
41DAP/39DAP1.103580.727
42DAP/41DAP0.93210.541
43DAP/42DAP1.13460.627
47DAP/43DAP1.145040.798
52DAP/47DAP0.876980.512
57DAP/52DAP0.949910.691
57DAP/7DAP1.176541

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.854390.183
17DAP/reference0.868910.031
27DAP/reference0.855640.248
39DAP/reference0.915220.264
41DAP/reference1.028181
42DAP/reference0.830290.048
43DAP/reference1.11490.537
47DAP/reference0.882560.101
52DAP/reference0.746710.04
57DAP/reference1.230780.5

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.319750.246
17DAP/reference1.031190.92
27DAP/reference1.129010.412
39DAP/reference1.104450.2
41DAP/reference1.016291
42DAP/reference1.076230.519
43DAP/reference1.102780.865
47DAP/reference1.055010.556
52DAP/reference1.153980.079
57DAP/reference1.158760.094

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.016110.939
17DAP/reference1.002140.825
27DAP/reference1.043590.721
39DAP/reference1.036390.813
41DAP/reference0.91280.264
42DAP/reference1.008360.816
43DAP/reference1.004760.685
47DAP/reference0.983440.538
52DAP/reference0.933260.405
57DAP/reference1.259110.067

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.068090.966
26DAP/20DAP1.20310.524
34DAP/26DAP1.184841
51DAP/34DAP1.247690.925
52DAP/51DAP1.198870.888
53DAP/52DAP0.877530.817
55DAP/53DAP0.9550.784
57DAP/55DAP0.944910.67
62DAP/57DAP1.129520.8
68DAP/62DAP1.215490.672
68DAP/14DAP1.705230.094

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.245980.527

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.81736
Mature Green Tomato/Ripe Tomato0.97980.715
Immature Eggplant/Mature Eggplant3.179390.05
Ripe Pepper/Ripe Tomato1.06931
Mature Eggplant/Ripe Tomato1.130620.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.871520.613
1-1-2/M82N/AN/A
12-2/M821.27401
12-4/M821.32153
1-3/M820.83397
2-1-1/M821.10871
2-1/M82N/AN/A
2-6/M821.226960.452
3-2/M820.85735
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.781780.642
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M821.01724
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.525210.337
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.625241
IL12-4/WTpooled1.933610.483
IL1-4/WTpooled0.69469
WT/WTpooled0.99751

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.891470.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.959371
DC3000/delta hrp 6h1.050261
DC3000/delta hrp 12h1.152761
DC3000/delta hrp 24h1.038390.743

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.259670.042
DC3000 delta B/DC3000 delta AB1.319170.204

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.169471
Exp 36h3.166560.693
Exp 60h2.27740.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.004711
Var 0h1.17380.259
Var 12h I row2-row11.249140.324
Var 12h NI row2-row11.197921
Var 36h I row2-row10.999961
Var 36h NI row2-row10.756281
Var 60h I row2-row10.730660.582
Var 60h NI row2-row11.076720.904
Time course 0hI-0hNI1.141190.574
Time course 12hI-12hNI1.135460.256
Time course 36hI-36hNI1.295940.056
Time course 60hI-60hNI2.856420.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.02350.921
transgenic ySAMdc/azygous control (breaker)0.719370.139
transgenic ySAMdc/azygous control (red)0.868421

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.000851

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.842660.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.937841
Manapal/WT (break)1.541040.123
Manapal/WT (red)0.821450.36