Expression of 1-1-3.2.18.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95634 | 0.689 |
27DAP/17DAP | 1.08007 | 0.902 |
39DAP/27DAP | 0.87006 | 0.382 |
41DAP/39DAP | 1.15483 | 0.624 |
42DAP/41DAP | 0.92426 | 1 |
43DAP/42DAP | 1.13752 | 0.726 |
47DAP/43DAP | 0.96771 | 0.84 |
52DAP/47DAP | 0.93021 | 0.781 |
57DAP/52DAP | 1.10424 | 0.908 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0936 | 0.147 |
17DAP/reference | 0.99627 | 0.904 |
27DAP/reference | 0.99357 | 0.779 |
39DAP/reference | 0.96578 | 0.35 |
41DAP/reference | 1.04773 | 0.451 |
42DAP/reference | 1.16396 | 0.001 |
43DAP/reference | 0.95685 | 0.448 |
47DAP/reference | 1.15782 | 0.002 |
52DAP/reference | 1.32441 | 0.041 |
57DAP/reference | 0.97267 | 0.456 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99109 | 0.782 |
27DAP/17DAP | 1.02947 | 0.915 |
39DAP/27DAP | 0.98717 | 0.919 |
41DAP/39DAP | 1.0089 | 0.914 |
42DAP/41DAP | 1.00911 | 1 |
43DAP/42DAP | 0.99694 | 1 |
47DAP/43DAP | 0.98067 | 0.846 |
52DAP/47DAP | 1.00775 | 0.979 |
57DAP/52DAP | 1.0222 | 0.858 |
57DAP/7DAP | 0.97971 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87385 | 0.224 |
17DAP/reference | 0.99629 | 0.599 |
27DAP/reference | 1.28862 | 0.131 |
39DAP/reference | 0.65775 | 0.017 |
41DAP/reference | 0.8053 | 0.111 |
42DAP/reference | 0.98152 | 0.531 |
43DAP/reference | 0.66265 | 0.012 |
47DAP/reference | 0.83823 | 0.293 |
52DAP/reference | 0.69397 | 0.013 |
57DAP/reference | 0.63889 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16964 | 0.404 |
17DAP/reference | 1.11461 | 0.113 |
27DAP/reference | 1.22831 | 0.065 |
39DAP/reference | 1.07712 | 0.463 |
41DAP/reference | 1.07059 | 0.766 |
42DAP/reference | 1.19219 | 0.233 |
43DAP/reference | 1.2595 | 0.069 |
47DAP/reference | 1.04291 | 0.556 |
52DAP/reference | 1.16507 | 0.015 |
57DAP/reference | 1.06032 | 0.306 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08452 | 0.433 |
17DAP/reference | 1.11444 | 0.436 |
27DAP/reference | 0.96322 | 0.442 |
39DAP/reference | 0.8647 | 0.069 |
41DAP/reference | 0.99021 | 0.754 |
42DAP/reference | 1.32171 | 0.035 |
43DAP/reference | 1.01182 | 0.712 |
47DAP/reference | 1.02459 | 0.901 |
52DAP/reference | 1.12346 | 0.499 |
57DAP/reference | 1.19865 | 0.126 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.93404 | 0.773 |
26DAP/20DAP | 1.01027 | 1 |
34DAP/26DAP | 0.99266 | 1 |
51DAP/34DAP | 1.04039 | 0.666 |
52DAP/51DAP | 0.99399 | 1 |
53DAP/52DAP | 1.01723 | 0.901 |
55DAP/53DAP | 1.00464 | 1 |
57DAP/55DAP | 1.04973 | 0.841 |
62DAP/57DAP | 0.98085 | 0.994 |
68DAP/62DAP | 1.0452 | 0.89 |
68DAP/14DAP | 0.98144 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.9289 | 0.122 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.14163 | 0.176 |
Mature Green Tomato/Ripe Tomato | 0.7887 | 0.119 |
Immature Eggplant/Mature Eggplant | 1.24506 | 0.076 |
Ripe Pepper/Ripe Tomato | 1.21881 | 1 |
Mature Eggplant/Ripe Tomato | 0.98011 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08435 | 0.877 |
1-1-2/M82 | 0.91472 | 0.804 |
12-2/M82 | 1.05284 | 1 |
12-4/M82 | 1.0122 | 1 |
1-3/M82 | 1.01896 | 1 |
2-1-1/M82 | 1.06802 | 0.764 |
2-1/M82 | 1.18796 | |
2-6/M82 | 0.98921 | 1 |
3-2/M82 | 0.92767 | 1 |
4-1-1/M82 | 1.21058 | 0.977 |
4-1/M82 | 1.07414 | 1 |
4-3-2/M82 | 0.85078 | 0.698 |
4-3/M82 | 1.02058 | 1 |
5-3/M82 | 0.925 | 1 |
6-2/M82 | 1.00023 | 1 |
6-3/M82 | 0.94704 | 0.423 |
7-1/M82 | 1.01517 | 1 |
7-2/M82 | 1.00407 | 1 |
9-3-2/M82 | 0.9865 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.26649 | |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | 1.1431 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.28176 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04914 | 0.875 |
DC3000/delta hrp 6h | 0.96119 | 0.95 |
DC3000/delta hrp 12h | 0.95273 | 1 |
DC3000/delta hrp 24h | 0.97804 | 0.861 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.06433 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.02043 | 0.646 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.15152 | 1 |
Exp 36h | 0.93112 | 0.471 |
Exp 60h | 0.99811 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98492 | 1 |
Var 0h | 1.0141 | 1 |
Var 12h I row2-row1 | 1.07752 | 0.224 |
Var 12h NI row2-row1 | 0.97736 | 0.627 |
Var 36h I row2-row1 | 1.02849 | 1 |
Var 36h NI row2-row1 | 0.9318 | 0.522 |
Var 60h I row2-row1 | 1.0397 | 1 |
Var 60h NI row2-row1 | 0.96859 | 1 |
Time course 0hI-0hNI | 1.02081 | 0.867 |
Time course 12hI-12hNI | 1.00915 | 0.854 |
Time course 36hI-36hNI | 1.19466 | 0.021 |
Time course 60hI-60hNI | 1.17683 | 0.033 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0982 | 0.482 |
transgenic ySAMdc/azygous control (breaker) | 1.02654 | 1 |
transgenic ySAMdc/azygous control (red) | 1.00802 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97443 | 0.067 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77602 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.75172 | 0.172 |
Manapal/WT (break) | 1.33744 | 0.126 |
Manapal/WT (red) | 1.20233 | 0.413 |
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