Expression of 1-1-3.2.18.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.956340.689
27DAP/17DAP1.080070.902
39DAP/27DAP0.870060.382
41DAP/39DAP1.154830.624
42DAP/41DAP0.924261
43DAP/42DAP1.137520.726
47DAP/43DAP0.967710.84
52DAP/47DAP0.930210.781
57DAP/52DAP1.104240.908

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.09360.147
17DAP/reference0.996270.904
27DAP/reference0.993570.779
39DAP/reference0.965780.35
41DAP/reference1.047730.451
42DAP/reference1.163960.001
43DAP/reference0.956850.448
47DAP/reference1.157820.002
52DAP/reference1.324410.041
57DAP/reference0.972670.456

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.991090.782
27DAP/17DAP1.029470.915
39DAP/27DAP0.987170.919
41DAP/39DAP1.00890.914
42DAP/41DAP1.009111
43DAP/42DAP0.996941
47DAP/43DAP0.980670.846
52DAP/47DAP1.007750.979
57DAP/52DAP1.02220.858
57DAP/7DAP0.979711

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.873850.224
17DAP/reference0.996290.599
27DAP/reference1.288620.131
39DAP/reference0.657750.017
41DAP/reference0.80530.111
42DAP/reference0.981520.531
43DAP/reference0.662650.012
47DAP/reference0.838230.293
52DAP/reference0.693970.013
57DAP/reference0.638890.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.169640.404
17DAP/reference1.114610.113
27DAP/reference1.228310.065
39DAP/reference1.077120.463
41DAP/reference1.070590.766
42DAP/reference1.192190.233
43DAP/reference1.25950.069
47DAP/reference1.042910.556
52DAP/reference1.165070.015
57DAP/reference1.060320.306

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.084520.433
17DAP/reference1.114440.436
27DAP/reference0.963220.442
39DAP/reference0.86470.069
41DAP/reference0.990210.754
42DAP/reference1.321710.035
43DAP/reference1.011820.712
47DAP/reference1.024590.901
52DAP/reference1.123460.499
57DAP/reference1.198650.126

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.934040.773
26DAP/20DAP1.010271
34DAP/26DAP0.992661
51DAP/34DAP1.040390.666
52DAP/51DAP0.993991
53DAP/52DAP1.017230.901
55DAP/53DAP1.004641
57DAP/55DAP1.049730.841
62DAP/57DAP0.980850.994
68DAP/62DAP1.04520.89
68DAP/14DAP0.981441

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.92890.122

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.141630.176
Mature Green Tomato/Ripe Tomato0.78870.119
Immature Eggplant/Mature Eggplant1.245060.076
Ripe Pepper/Ripe Tomato1.218811
Mature Eggplant/Ripe Tomato0.980111

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.084350.877
1-1-2/M820.914720.804
12-2/M821.052841
12-4/M821.01221
1-3/M821.018961
2-1-1/M821.068020.764
2-1/M821.18796
2-6/M820.989211
3-2/M820.927671
4-1-1/M821.210580.977
4-1/M821.074141
4-3-2/M820.850780.698
4-3/M821.020581
5-3/M820.9251
6-2/M821.000231
6-3/M820.947040.423
7-1/M821.015171
7-2/M821.004071
9-3-2/M820.98651

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.26649
IL1-4/WTpooledN/AN/A
WT/WTpooled1.14311

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.281760.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.049140.875
DC3000/delta hrp 6h0.961190.95
DC3000/delta hrp 12h0.952731
DC3000/delta hrp 24h0.978040.861

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.064330.145
DC3000 delta B/DC3000 delta AB1.020430.646

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.151521
Exp 36h0.931120.471
Exp 60h0.998111

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.984921
Var 0h1.01411
Var 12h I row2-row11.077520.224
Var 12h NI row2-row10.977360.627
Var 36h I row2-row11.028491
Var 36h NI row2-row10.93180.522
Var 60h I row2-row11.03971
Var 60h NI row2-row10.968591
Time course 0hI-0hNI1.020810.867
Time course 12hI-12hNI1.009150.854
Time course 36hI-36hNI1.194660.021
Time course 60hI-60hNI1.176830.033

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.09820.482
transgenic ySAMdc/azygous control (breaker)1.026541
transgenic ySAMdc/azygous control (red)1.008021

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.974430.067

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.776020.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.751720.172
Manapal/WT (break)1.337440.126
Manapal/WT (red)1.202330.413