Expression of 1-1-3.2.19.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05863 | 0.827 |
27DAP/17DAP | 1.05574 | 0.881 |
39DAP/27DAP | 1.1227 | 0.853 |
41DAP/39DAP | 1.29968 | 0.624 |
42DAP/41DAP | 0.96602 | 1 |
43DAP/42DAP | 1.19002 | 0.894 |
47DAP/43DAP | 1.0601 | 0.965 |
52DAP/47DAP | 1.00521 | 0.95 |
57DAP/52DAP | 0.98902 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00521 | 0.787 |
17DAP/reference | 0.9713 | 0.567 |
27DAP/reference | 1.1079 | 0.165 |
39DAP/reference | 0.91737 | 0.025 |
41DAP/reference | 1.08121 | 0.102 |
42DAP/reference | 1.12459 | 0.311 |
43DAP/reference | 0.96643 | 0.611 |
47DAP/reference | 1.11617 | 0.448 |
52DAP/reference | 1.52348 | 0.016 |
57DAP/reference | 1.22071 | 0.094 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02595 | 0.91 |
27DAP/17DAP | 1.01423 | 0.967 |
39DAP/27DAP | 1.06104 | 0.519 |
41DAP/39DAP | 1.04494 | 0.88 |
42DAP/41DAP | 0.99781 | 0.887 |
43DAP/42DAP | 1.00785 | 0.83 |
47DAP/43DAP | 1.03618 | 0.853 |
52DAP/47DAP | 0.93498 | 0.512 |
57DAP/52DAP | 0.93845 | 0.519 |
57DAP/7DAP | 1.07005 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08118 | 0.511 |
17DAP/reference | 1.05904 | 0.092 |
27DAP/reference | 1.04911 | 0.012 |
39DAP/reference | 1.04829 | 0.077 |
41DAP/reference | 1.06893 | 0.191 |
42DAP/reference | 1.02782 | 0.233 |
43DAP/reference | 0.99938 | 0.764 |
47DAP/reference | 1.22308 | 0.054 |
52DAP/reference | 1.00531 | 1 |
57DAP/reference | 1.03689 | 0.382 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77187 | 0.11 |
17DAP/reference | 0.85548 | 0.059 |
27DAP/reference | 1.20734 | 0.297 |
39DAP/reference | 1.47156 | 0.041 |
41DAP/reference | 1.69832 | 0.011 |
42DAP/reference | 1.36758 | 0.009 |
43DAP/reference | 0.79655 | 0.121 |
47DAP/reference | 1.0619 | 0.232 |
52DAP/reference | 1.19688 | 0.106 |
57DAP/reference | 0.75392 | 0.032 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9745 | 0.607 |
17DAP/reference | 1.02358 | 0.9 |
27DAP/reference | 1.02967 | 0.531 |
39DAP/reference | 1.05448 | 0.163 |
41DAP/reference | 1.14189 | 0.306 |
42DAP/reference | 1.31895 | 0.204 |
43DAP/reference | 1.42537 | 0.107 |
47DAP/reference | 1.1636 | 0.76 |
52DAP/reference | 0.95564 | 0.582 |
57DAP/reference | 2.34639 | 0.01 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.83827 | 0.44 |
26DAP/20DAP | 0.91715 | 0.512 |
34DAP/26DAP | 0.96538 | 0.848 |
51DAP/34DAP | 1.04179 | 0.677 |
52DAP/51DAP | 1.06682 | 0.51 |
53DAP/52DAP | 1.0254 | 0.901 |
55DAP/53DAP | 0.99219 | 0.908 |
57DAP/55DAP | 0.98829 | 0.902 |
62DAP/57DAP | 1.1255 | 0.678 |
68DAP/62DAP | 1.08282 | 0.939 |
68DAP/14DAP | 1.93067 | 0.057 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.04382 | 0.558 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.86329 | 0.317 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 1.28071 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.93262 | 0.944 |
1-1-2/M82 | 0.97297 | 1 |
12-2/M82 | 1.01522 | 1 |
12-4/M82 | 1.00184 | 1 |
1-3/M82 | 0.98772 | 1 |
2-1-1/M82 | 1.16445 | 0.764 |
2-1/M82 | 1.39008 | |
2-6/M82 | 1.0388 | 0.695 |
3-2/M82 | 0.97855 | 1 |
4-1-1/M82 | 0.99246 | 1 |
4-1/M82 | 1.08104 | 0.466 |
4-3-2/M82 | 0.92662 | 1 |
4-3/M82 | 0.85388 | 0.611 |
5-3/M82 | 1.08549 | 1 |
6-2/M82 | 0.95177 | |
6-3/M82 | 0.98873 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.09134 | 1 |
9-3-2/M82 | 0.88754 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.10887 | 0.365 |
IL2-6/WTpooled | 0.90857 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.06235 | 1 |
IL12-4/WTpooled | 1.07234 | 0.737 |
IL1-4/WTpooled | 1.05924 | 1 |
WT/WTpooled | 0.99589 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.4428 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98566 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.98025 | 1 |
DC3000/delta hrp 24h | 1.06118 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.19753 | 0.145 |
DC3000 delta B/DC3000 delta AB | 1.15239 | 0.237 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.29113 | 0.228 |
Exp 36h | 2.07606 | 0.409 |
Exp 60h | 2.16499 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97075 | 1 |
Var 0h | 0.90188 | 1 |
Var 12h I row2-row1 | 0.90209 | 0.77 |
Var 12h NI row2-row1 | 1.57436 | 0.649 |
Var 36h I row2-row1 | 1.03647 | 1 |
Var 36h NI row2-row1 | 0.7027 | 0.522 |
Var 60h I row2-row1 | 0.72563 | 0.285 |
Var 60h NI row2-row1 | 0.90744 | 0.932 |
Time course 0hI-0hNI | 1.24127 | 0.537 |
Time course 12hI-12hNI | 1.15083 | 0.409 |
Time course 36hI-36hNI | 3.87423 | 0.004 |
Time course 60hI-60hNI | 10.0006 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01591 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | 1.16147 | 1 |
transgenic ySAMdc/azygous control (red) | 1.10376 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.45368 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.61598 | 0.307 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.06644 | 1 |
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