Expression of 1-1-3.2.19.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.058630.827
27DAP/17DAP1.055740.881
39DAP/27DAP1.12270.853
41DAP/39DAP1.299680.624
42DAP/41DAP0.966021
43DAP/42DAP1.190020.894
47DAP/43DAP1.06010.965
52DAP/47DAP1.005210.95
57DAP/52DAP0.989020.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.005210.787
17DAP/reference0.97130.567
27DAP/reference1.10790.165
39DAP/reference0.917370.025
41DAP/reference1.081210.102
42DAP/reference1.124590.311
43DAP/reference0.966430.611
47DAP/reference1.116170.448
52DAP/reference1.523480.016
57DAP/reference1.220710.094

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.025950.91
27DAP/17DAP1.014230.967
39DAP/27DAP1.061040.519
41DAP/39DAP1.044940.88
42DAP/41DAP0.997810.887
43DAP/42DAP1.007850.83
47DAP/43DAP1.036180.853
52DAP/47DAP0.934980.512
57DAP/52DAP0.938450.519
57DAP/7DAP1.070051

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.081180.511
17DAP/reference1.059040.092
27DAP/reference1.049110.012
39DAP/reference1.048290.077
41DAP/reference1.068930.191
42DAP/reference1.027820.233
43DAP/reference0.999380.764
47DAP/reference1.223080.054
52DAP/reference1.005311
57DAP/reference1.036890.382

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.771870.11
17DAP/reference0.855480.059
27DAP/reference1.207340.297
39DAP/reference1.471560.041
41DAP/reference1.698320.011
42DAP/reference1.367580.009
43DAP/reference0.796550.121
47DAP/reference1.06190.232
52DAP/reference1.196880.106
57DAP/reference0.753920.032

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.97450.607
17DAP/reference1.023580.9
27DAP/reference1.029670.531
39DAP/reference1.054480.163
41DAP/reference1.141890.306
42DAP/reference1.318950.204
43DAP/reference1.425370.107
47DAP/reference1.16360.76
52DAP/reference0.955640.582
57DAP/reference2.346390.01

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.838270.44
26DAP/20DAP0.917150.512
34DAP/26DAP0.965380.848
51DAP/34DAP1.041790.677
52DAP/51DAP1.066820.51
53DAP/52DAP1.02540.901
55DAP/53DAP0.992190.908
57DAP/55DAP0.988290.902
62DAP/57DAP1.12550.678
68DAP/62DAP1.082820.939
68DAP/14DAP1.930670.057

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.043820.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.863290.317
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato1.28071

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.932620.944
1-1-2/M820.972971
12-2/M821.015221
12-4/M821.001841
1-3/M820.987721
2-1-1/M821.164450.764
2-1/M821.39008
2-6/M821.03880.695
3-2/M820.978551
4-1-1/M820.992461
4-1/M821.081040.466
4-3-2/M820.926621
4-3/M820.853880.611
5-3/M821.085491
6-2/M820.95177
6-3/M820.988731
7-1/M82N/AN/A
7-2/M821.091341
9-3-2/M820.887540.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.108870.365
IL2-6/WTpooled0.908571
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.062351
IL12-4/WTpooled1.072340.737
IL1-4/WTpooled1.059241
WT/WTpooled0.995891

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.44280.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.985661
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.980251
DC3000/delta hrp 24h1.061180.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.197530.145
DC3000 delta B/DC3000 delta AB1.152390.237

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.291130.228
Exp 36h2.076060.409
Exp 60h2.164990.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.970751
Var 0h0.901881
Var 12h I row2-row10.902090.77
Var 12h NI row2-row11.574360.649
Var 36h I row2-row11.036471
Var 36h NI row2-row10.70270.522
Var 60h I row2-row10.725630.285
Var 60h NI row2-row10.907440.932
Time course 0hI-0hNI1.241270.537
Time course 12hI-12hNI1.150830.409
Time course 36hI-36hNI3.874230.004
Time course 60hI-60hNI10.00060.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.015910.931
transgenic ySAMdc/azygous control (breaker)1.161471
transgenic ySAMdc/azygous control (red)1.103761

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.453680.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.615980.307
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.066441