Expression of 1-1-3.2.2.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.77918 | 0.134 |
27DAP/17DAP | 0.92271 | 0.846 |
39DAP/27DAP | 1.82366 | 0.127 |
41DAP/39DAP | 0.77667 | 0.256 |
42DAP/41DAP | 1.27776 | 0.578 |
43DAP/42DAP | 0.7847 | 0.551 |
47DAP/43DAP | 0.83104 | 0.467 |
52DAP/47DAP | 1.10698 | 0.973 |
57DAP/52DAP | 1.02889 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19286 | 0.126 |
17DAP/reference | 0.84898 | 0.011 |
27DAP/reference | 0.80855 | 0.055 |
39DAP/reference | 1.12403 | 0.157 |
41DAP/reference | 1.0363 | 0.808 |
42DAP/reference | 1.16509 | 0.252 |
43DAP/reference | 0.88957 | 0.019 |
47DAP/reference | 1.04532 | 0.72 |
52DAP/reference | 0.9299 | 0.283 |
57DAP/reference | 0.96007 | 0.34 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.83736 | 0.148 |
27DAP/17DAP | 1.07184 | 0.671 |
39DAP/27DAP | 0.94489 | 0.648 |
41DAP/39DAP | 1.28851 | 0.347 |
42DAP/41DAP | 0.9265 | 0.481 |
43DAP/42DAP | 0.90184 | 0.137 |
47DAP/43DAP | 1.04964 | 0.93 |
52DAP/47DAP | 0.79912 | 0.075 |
57DAP/52DAP | 0.95663 | 0.678 |
57DAP/7DAP | 0.66766 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29874 | 0.093 |
17DAP/reference | 1.23543 | 0.013 |
27DAP/reference | 1.84108 | 0.006 |
39DAP/reference | 1.14692 | 0.12 |
41DAP/reference | 1.35815 | 0.011 |
42DAP/reference | 1.70458 | 0.016 |
43DAP/reference | 1.18159 | 0.105 |
47DAP/reference | 1.30451 | 0.032 |
52DAP/reference | 1.75737 | 0.008 |
57DAP/reference | 1.42886 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.82301 | 0.038 |
17DAP/reference | 1.79764 | 0.013 |
27DAP/reference | 2.396 | 0.013 |
39DAP/reference | 1.74305 | 0.011 |
41DAP/reference | 1.85593 | 0.005 |
42DAP/reference | 2.09026 | 0.007 |
43DAP/reference | 2.22313 | 0.009 |
47DAP/reference | 2.17285 | 0.008 |
52DAP/reference | 2.09648 | 0.006 |
57DAP/reference | 1.56621 | 0.035 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22229 | 0.074 |
17DAP/reference | 1.35488 | 0.215 |
27DAP/reference | 1.17156 | 0.033 |
39DAP/reference | 1.53416 | 0.004 |
41DAP/reference | 1.63755 | 0.047 |
42DAP/reference | 1.98306 | 0.01 |
43DAP/reference | 1.87613 | 0.121 |
47DAP/reference | 1.23987 | 0.104 |
52DAP/reference | 1.43794 | 0.033 |
57DAP/reference | 2.14568 | 0.012 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10108 | 0.966 |
26DAP/20DAP | 1.44521 | 0.442 |
34DAP/26DAP | 0.91085 | 0.777 |
51DAP/34DAP | 0.75616 | 0.073 |
52DAP/51DAP | 0.98202 | 1 |
53DAP/52DAP | 0.8467 | 0.365 |
55DAP/53DAP | 0.82505 | 0.35 |
57DAP/55DAP | 1.80014 | 0.407 |
62DAP/57DAP | 1.1512 | 0.868 |
68DAP/62DAP | 1.00778 | 0.914 |
68DAP/14DAP | 0.94128 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.74743 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.26924 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.41994 | 0.166 |
Immature Eggplant/Mature Eggplant | 0.98201 | 1 |
Ripe Pepper/Ripe Tomato | 0.91362 | 1 |
Mature Eggplant/Ripe Tomato | 1.91499 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.10226 | 1 |
1-1-2/M82 | 1.14555 | 1 |
12-2/M82 | 0.92287 | 0.955 |
12-4/M82 | 0.98285 | 1 |
1-3/M82 | 1.44367 | 1 |
2-1-1/M82 | 0.89993 | 0.565 |
2-1/M82 | 0.60485 | |
2-6/M82 | 0.91139 | 1 |
3-2/M82 | 0.88994 | |
4-1-1/M82 | 1.02884 | 1 |
4-1/M82 | 1.32474 | |
4-3-2/M82 | 1.70661 | 0.508 |
4-3/M82 | 1.57011 | 1 |
5-3/M82 | 1.17065 | 0.496 |
6-2/M82 | 0.91422 | |
6-3/M82 | 1.17763 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.07342 | 0.385 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87078 | 1 |
IL2-6/WTpooled | 1.04424 | 1 |
IL7-5/WTpooled | 1.16103 | 0.67 |
IL7-3/WTpooled | 0.88986 | 1 |
IL12-4/WTpooled | 1.00209 | 1 |
IL1-4/WTpooled | 0.90628 | 0.834 |
WT/WTpooled | 0.98214 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.12705 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04946 | 0.921 |
DC3000/delta hrp 6h | 0.95056 | 0.95 |
DC3000/delta hrp 12h | 0.91112 | 1 |
DC3000/delta hrp 24h | 1.02154 | 0.76 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.17469 | 0.355 |
DC3000 delta B/DC3000 delta AB | 1.19122 | 0.284 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.86804 | 1 |
Exp 36h | 1.31774 | 1 |
Exp 60h | 1.11927 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96404 | 1 |
Var 0h | 0.93106 | 1 |
Var 12h I row2-row1 | 0.90759 | 0.627 |
Var 12h NI row2-row1 | 1.11852 | 1 |
Var 36h I row2-row1 | 1.15451 | 0.309 |
Var 36h NI row2-row1 | 0.90891 | 0.706 |
Var 60h I row2-row1 | 0.93971 | 0.952 |
Var 60h NI row2-row1 | 0.91221 | 0.977 |
Time course 0hI-0hNI | 0.83302 | 0.058 |
Time course 12hI-12hNI | 1.03372 | 0.747 |
Time course 36hI-36hNI | 1.24034 | 0.28 |
Time course 60hI-60hNI | 1.30191 | 0.037 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.89908 | 0.338 |
transgenic ySAMdc/azygous control (breaker) | 1.74723 | 0.166 |
transgenic ySAMdc/azygous control (red) | 1.296 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03701 | 0.287 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.88586 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92778 | 1 |
Manapal/WT (break) | 1.05339 | 1 |
Manapal/WT (red) | 1.32979 | 0.413 |
|
|