Expression of 1-1-3.2.2.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.779180.134
27DAP/17DAP0.922710.846
39DAP/27DAP1.823660.127
41DAP/39DAP0.776670.256
42DAP/41DAP1.277760.578
43DAP/42DAP0.78470.551
47DAP/43DAP0.831040.467
52DAP/47DAP1.106980.973
57DAP/52DAP1.028891

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.192860.126
17DAP/reference0.848980.011
27DAP/reference0.808550.055
39DAP/reference1.124030.157
41DAP/reference1.03630.808
42DAP/reference1.165090.252
43DAP/reference0.889570.019
47DAP/reference1.045320.72
52DAP/reference0.92990.283
57DAP/reference0.960070.34

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.837360.148
27DAP/17DAP1.071840.671
39DAP/27DAP0.944890.648
41DAP/39DAP1.288510.347
42DAP/41DAP0.92650.481
43DAP/42DAP0.901840.137
47DAP/43DAP1.049640.93
52DAP/47DAP0.799120.075
57DAP/52DAP0.956630.678
57DAP/7DAP0.667661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.298740.093
17DAP/reference1.235430.013
27DAP/reference1.841080.006
39DAP/reference1.146920.12
41DAP/reference1.358150.011
42DAP/reference1.704580.016
43DAP/reference1.181590.105
47DAP/reference1.304510.032
52DAP/reference1.757370.008
57DAP/reference1.428860.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.823010.038
17DAP/reference1.797640.013
27DAP/reference2.3960.013
39DAP/reference1.743050.011
41DAP/reference1.855930.005
42DAP/reference2.090260.007
43DAP/reference2.223130.009
47DAP/reference2.172850.008
52DAP/reference2.096480.006
57DAP/reference1.566210.035

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.222290.074
17DAP/reference1.354880.215
27DAP/reference1.171560.033
39DAP/reference1.534160.004
41DAP/reference1.637550.047
42DAP/reference1.983060.01
43DAP/reference1.876130.121
47DAP/reference1.239870.104
52DAP/reference1.437940.033
57DAP/reference2.145680.012

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.101080.966
26DAP/20DAP1.445210.442
34DAP/26DAP0.910850.777
51DAP/34DAP0.756160.073
52DAP/51DAP0.982021
53DAP/52DAP0.84670.365
55DAP/53DAP0.825050.35
57DAP/55DAP1.800140.407
62DAP/57DAP1.15120.868
68DAP/62DAP1.007780.914
68DAP/14DAP0.941281

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.747430.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.269240.058
Mature Green Tomato/Ripe Tomato1.419940.166
Immature Eggplant/Mature Eggplant0.982011
Ripe Pepper/Ripe Tomato0.913621
Mature Eggplant/Ripe Tomato1.914990.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.102261
1-1-2/M821.145551
12-2/M820.922870.955
12-4/M820.982851
1-3/M821.443671
2-1-1/M820.899930.565
2-1/M820.60485
2-6/M820.911391
3-2/M820.88994
4-1-1/M821.028841
4-1/M821.32474
4-3-2/M821.706610.508
4-3/M821.570111
5-3/M821.170650.496
6-2/M820.91422
6-3/M821.17763
7-1/M82N/AN/A
7-2/M821.073420.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.870781
IL2-6/WTpooled1.044241
IL7-5/WTpooled1.161030.67
IL7-3/WTpooled0.889861
IL12-4/WTpooled1.002091
IL1-4/WTpooled0.906280.834
WT/WTpooled0.982141

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.127050.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.049460.921
DC3000/delta hrp 6h0.950560.95
DC3000/delta hrp 12h0.911121
DC3000/delta hrp 24h1.021540.76

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.174690.355
DC3000 delta B/DC3000 delta AB1.191220.284

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.868041
Exp 36h1.317741
Exp 60h1.119271

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.964041
Var 0h0.931061
Var 12h I row2-row10.907590.627
Var 12h NI row2-row11.118521
Var 36h I row2-row11.154510.309
Var 36h NI row2-row10.908910.706
Var 60h I row2-row10.939710.952
Var 60h NI row2-row10.912210.977
Time course 0hI-0hNI0.833020.058
Time course 12hI-12hNI1.033720.747
Time course 36hI-36hNI1.240340.28
Time course 60hI-60hNI1.301910.037

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.899080.338
transgenic ySAMdc/azygous control (breaker)1.747230.166
transgenic ySAMdc/azygous control (red)1.2960.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.037010.287

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.885860.268

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.927781
Manapal/WT (break)1.053391
Manapal/WT (red)1.329790.413