Expression of 1-1-3.2.2.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP3.802970.264
27DAP/17DAP1.21290.911
39DAP/27DAP1.602290.876
41DAP/39DAP1.10070.96
42DAP/41DAP0.869331
43DAP/42DAP1.652210.236
47DAP/43DAP0.889370.613
52DAP/47DAP0.416190.066
57DAP/52DAP1.42810.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.836120.432
17DAP/referenceN/AN/A
27DAP/reference3.51907
39DAP/reference0.67015
41DAP/reference1.106760.855
42DAP/reference1.843250.001
43DAP/reference1.068860.518
47DAP/reference1.685070.329
52DAP/reference1.212870.407
57DAP/reference1.245990.405

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.856110.323
27DAP/17DAP0.797980.137
39DAP/27DAP0.943240.712
41DAP/39DAP2.509080.362
42DAP/41DAP1.145851
43DAP/42DAP1.149381
47DAP/43DAP1.278750.95
52DAP/47DAP1.117060.973
57DAP/52DAP1.237940.479
57DAP/7DAP1.72956

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.007711
17DAP/reference1.146741
27DAP/reference1.120920.664
39DAP/reference1.269640.04
41DAP/reference1.514460.01
42DAP/reference1.866630.008
43DAP/reference2.036870.007
47DAP/reference2.454810.017
52DAP/reference2.05650.007
57DAP/reference2.038010.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.49291
17DAP/reference0.60489
27DAP/reference0.89233
39DAP/reference0.783
41DAP/reference1.02521
42DAP/reference0.74561
43DAP/reference1.143170.401
47DAP/reference1.287010.413
52DAP/reference1.222950.988
57DAP/reference1.210841

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.715050.087
17DAP/reference1.3180.712
27DAP/reference0.896490.113
39DAP/reference1.190930.182
41DAP/reference0.900950.371
42DAP/reference1.11790.576
43DAP/reference1.323480.183
47DAP/reference0.59293
52DAP/reference1.452090.167
57DAP/reference1.626140.255

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.24155
26DAP/20DAPN/AN/A
34DAP/26DAP0.708310.076
51DAP/34DAPN/AN/A
52DAP/51DAP2.360010.253
53DAP/52DAP1.43150.901
55DAP/53DAP0.74146
57DAP/55DAPN/AN/A
62DAP/57DAPN/AN/A
68DAP/62DAP0.97945
68DAP/14DAP1.5120.042

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.001221
IL2-6/WTpooled1.240220.395
IL7-5/WTpooled1.142651
IL7-3/WTpooled0.808711
IL12-4/WTpooled0.978111
IL1-4/WTpooled1.012121
WT/WTpooled0.997321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.32516
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A