Expression of 1-1-3.2.3.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76476 | 0.427 |
27DAP/17DAP | 0.76025 | 0.635 |
39DAP/27DAP | 0.8164 | 0.353 |
41DAP/39DAP | 1.38623 | 0.483 |
42DAP/41DAP | 1.11433 | 1 |
43DAP/42DAP | 1.06635 | 0.937 |
47DAP/43DAP | 1.10067 | 0.999 |
52DAP/47DAP | 0.91157 | 0.709 |
57DAP/52DAP | 1.16516 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76792 | 0.089 |
17DAP/reference | 0.86099 | 0.147 |
27DAP/reference | 0.95303 | 0.668 |
39DAP/reference | 1.06468 | 0.871 |
41DAP/reference | 1.10027 | 1 |
42DAP/reference | 0.70834 | 0.043 |
43DAP/reference | 1.01324 | |
47DAP/reference | 0.71923 | 0.019 |
52DAP/reference | 0.98276 | 0.636 |
57DAP/reference | 0.48842 | 0.221 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.88158 | 0.442 |
27DAP/17DAP | 0.94393 | 0.854 |
39DAP/27DAP | 1.33726 | 0.174 |
41DAP/39DAP | 1.05665 | 0.909 |
42DAP/41DAP | 0.85282 | 0.52 |
43DAP/42DAP | 1.00142 | 0.991 |
47DAP/43DAP | 1.02636 | 0.973 |
52DAP/47DAP | 1.38972 | 0.402 |
57DAP/52DAP | 1.28195 | 0.23 |
57DAP/7DAP | 0.65721 | 0.219 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82837 | 0.146 |
17DAP/reference | 0.65186 | 0.064 |
27DAP/reference | 0.89048 | 0.231 |
39DAP/reference | 1.05993 | 0.552 |
41DAP/reference | 0.99065 | 0.565 |
42DAP/reference | 0.90483 | 0.32 |
43DAP/reference | 0.94119 | 0.44 |
47DAP/reference | 0.88866 | 0.168 |
52DAP/reference | 0.7697 | 0.019 |
57DAP/reference | 1.09836 | 0.907 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.72504 | 0.115 |
17DAP/reference | 0.95872 | 0.499 |
27DAP/reference | 1.0616 | 0.648 |
39DAP/reference | 0.80615 | 0.091 |
41DAP/reference | 0.91025 | 0.194 |
42DAP/reference | 0.89006 | 0.261 |
43DAP/reference | 0.96391 | 0.539 |
47DAP/reference | 0.9814 | 0.527 |
52DAP/reference | 0.98257 | 0.537 |
57DAP/reference | 0.94252 | 0.488 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.66855 | 0.057 |
17DAP/reference | 0.88837 | 0.537 |
27DAP/reference | 1.39454 | 0.248 |
39DAP/reference | 0.74406 | 0.328 |
41DAP/reference | 1.13423 | 0.257 |
42DAP/reference | 1.13695 | 0.175 |
43DAP/reference | 0.72153 | 0.043 |
47DAP/reference | 0.93712 | 0.371 |
52DAP/reference | 0.70703 | 0.166 |
57DAP/reference | 0.87613 | 0.247 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.4408 | 0.916 |
26DAP/20DAP | 1.55018 | 1 |
34DAP/26DAP | 1.86306 | 1 |
51DAP/34DAP | 0.86452 | 0.618 |
52DAP/51DAP | 1.00556 | 1 |
53DAP/52DAP | 1.13477 | 0.697 |
55DAP/53DAP | 1.1368 | 0.748 |
57DAP/55DAP | 0.99159 | 0.944 |
62DAP/57DAP | 1.31449 | 0.35 |
68DAP/62DAP | 1.1805 | 0.831 |
68DAP/14DAP | 0.59465 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.50418 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.20147 | 0.774 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.48114 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.09748 | |
4-3-2/M82 | 1.06337 | |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.102 | 0.365 |
IL2-6/WTpooled | 0.89969 | 0.358 |
IL7-5/WTpooled | 0.70205 | 1 |
IL7-3/WTpooled | 0.83734 | 0.418 |
IL12-4/WTpooled | 0.98461 | 1 |
IL1-4/WTpooled | 0.89079 | 0.415 |
WT/WTpooled | 1.01226 | 0.999 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95417 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.85536 | 0.941 |
DC3000/delta hrp 6h | 0.58494 | |
DC3000/delta hrp 12h | 1.01198 | 1 |
DC3000/delta hrp 24h | 0.89054 | 0.28 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.58931 | |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99849 | 1 |
Var 0h | 1.57356 | 0.421 |
Var 12h I row2-row1 | 0.89946 | 0.344 |
Var 12h NI row2-row1 | 1.10799 | 1 |
Var 36h I row2-row1 | 1.18299 | 0.489 |
Var 36h NI row2-row1 | 0.75421 | 0.25 |
Var 60h I row2-row1 | 0.87238 | 0.952 |
Var 60h NI row2-row1 | 0.77132 | 0.298 |
Time course 0hI-0hNI | 0.86047 | 0.11 |
Time course 12hI-12hNI | 1.00975 | 0.885 |
Time course 36hI-36hNI | 1.14503 | 0.401 |
Time course 60hI-60hNI | 1.06738 | 0.359 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 3.47268 | 0.248 |
transgenic ySAMdc/azygous control (red) | 2.1007 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97742 | 0.277 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.0719 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.16511 | 0.105 |
Manapal/WT (break) | 1.55985 | 0.183 |
Manapal/WT (red) | 1.34531 | 0.164 |
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