Expression of 1-1-3.2.4.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.26808 | 0.348 |
27DAP/17DAP | 1.0209 | 1 |
39DAP/27DAP | 1.06293 | 0.903 |
41DAP/39DAP | 0.98615 | 0.941 |
42DAP/41DAP | 1.43135 | 0.295 |
43DAP/42DAP | 0.93754 | 0.801 |
47DAP/43DAP | 1.34233 | 0.216 |
52DAP/47DAP | 0.94071 | 0.765 |
57DAP/52DAP | 0.92514 | 0.92 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80633 | 0.033 |
17DAP/reference | 1.03714 | 0.606 |
27DAP/reference | 1.06427 | 0.227 |
39DAP/reference | 1.15064 | 0.035 |
41DAP/reference | 1.08173 | 0.451 |
42DAP/reference | 1.12161 | 0.004 |
43DAP/reference | 1.40347 | 0.008 |
47DAP/reference | 1.60504 | 0.001 |
52DAP/reference | 1.78923 | 0.007 |
57DAP/reference | 1.53074 | 0.008 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.65905 | 0.036 |
27DAP/17DAP | 0.89113 | 0.172 |
39DAP/27DAP | 1.05582 | 0.623 |
41DAP/39DAP | 0.9474 | 0.849 |
42DAP/41DAP | 0.89936 | 0.267 |
43DAP/42DAP | 1.08431 | 0.086 |
47DAP/43DAP | 1.03264 | 0.892 |
52DAP/47DAP | 1.31849 | 0.28 |
57DAP/52DAP | 1.09161 | 0.662 |
57DAP/7DAP | 1.56057 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19704 | 0.072 |
17DAP/reference | 1.05211 | 0.199 |
27DAP/reference | 0.91351 | 0.088 |
39DAP/reference | 1.06841 | 0.222 |
41DAP/reference | 0.99215 | 0.646 |
42DAP/reference | 1.05236 | 0.534 |
43DAP/reference | 1.08826 | 0.344 |
47DAP/reference | 1.25921 | 0.044 |
52DAP/reference | 1.14883 | 0.062 |
57DAP/reference | 1.0626 | 0.094 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07617 | 1 |
17DAP/reference | 1.07659 | 0.508 |
27DAP/reference | 1.03123 | 0.715 |
39DAP/reference | 1.26004 | 0.16 |
41DAP/reference | 1.12572 | 0.199 |
42DAP/reference | 1.48656 | 0.015 |
43DAP/reference | 1.07721 | 0.569 |
47DAP/reference | 1.48006 | 0.008 |
52DAP/reference | 0.98333 | 0.537 |
57DAP/reference | 0.98471 | 0.68 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.48748 | 0.025 |
17DAP/reference | 1.07319 | 0.405 |
27DAP/reference | 1.02075 | 0.967 |
39DAP/reference | 1.07294 | 0.157 |
41DAP/reference | 1.1223 | 0.276 |
42DAP/reference | 1.53246 | 0.009 |
43DAP/reference | 1.40435 | 0.022 |
47DAP/reference | 1.79157 | 0.008 |
52DAP/reference | 1.34042 | 0.324 |
57DAP/reference | 3.21299 | 0.007 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.1406 | 0.878 |
26DAP/20DAP | 1.21798 | 0.275 |
34DAP/26DAP | 1.08102 | 1 |
51DAP/34DAP | 1.03396 | 0.666 |
52DAP/51DAP | 0.87677 | 1 |
53DAP/52DAP | 1.24311 | 0.428 |
55DAP/53DAP | 1.04202 | 0.994 |
57DAP/55DAP | 0.91373 | 0.601 |
62DAP/57DAP | 0.97248 | 0.994 |
68DAP/62DAP | 0.96889 | 0.787 |
68DAP/14DAP | 1.11511 | 0.504 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.39937 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.16625 | 0.113 |
Mature Green Tomato/Ripe Tomato | 0.61805 | 0.026 |
Immature Eggplant/Mature Eggplant | 0.91477 | 0.407 |
Ripe Pepper/Ripe Tomato | 0.30757 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.34234 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.25809 | 0.574 |
1-1-2/M82 | 1.07767 | 1 |
12-2/M82 | 1.17659 | 1 |
12-4/M82 | 1.21688 | 1 |
1-3/M82 | 1.31029 | |
2-1-1/M82 | 0.89904 | 0.92 |
2-1/M82 | 0.64122 | 0.322 |
2-6/M82 | 1.02877 | 1 |
3-2/M82 | 0.76332 | |
4-1-1/M82 | 0.98165 | 1 |
4-1/M82 | 1.44071 | 0.466 |
4-3-2/M82 | 1.42269 | 0.508 |
4-3/M82 | 1.36473 | 1 |
5-3/M82 | 0.89221 | 0.642 |
6-2/M82 | 0.7937 | 1 |
6-3/M82 | 0.97421 | 1 |
7-1/M82 | 0.94913 | 1 |
7-2/M82 | 0.95825 | 0.881 |
9-3-2/M82 | 1.51133 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.31729 | 0.277 |
IL2-6/WTpooled | 1.14677 | 1 |
IL7-5/WTpooled | 1.49076 | 1 |
IL7-3/WTpooled | 1.05927 | 1 |
IL12-4/WTpooled | 1.33603 | 0.624 |
IL1-4/WTpooled | 1.06023 | 1 |
WT/WTpooled | 1.02916 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.11394 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02773 | 0.921 |
DC3000/delta hrp 6h | 1.00841 | 0.95 |
DC3000/delta hrp 12h | 1.11105 | 1 |
DC3000/delta hrp 24h | 0.87467 | 0.134 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.79093 | 0.124 |
DC3000 delta B/DC3000 delta AB | 0.89965 | 0.167 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.01461 | 1 |
Exp 36h | 0.72041 | 0.41 |
Exp 60h | 0.69796 | 0.266 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.08444 | 0.98 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01735 | 0.798 |
transgenic ySAMdc/azygous control (breaker) | 0.64713 | 0.118 |
transgenic ySAMdc/azygous control (red) | 0.9856 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.11781 | 0.155 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.61384 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.65656 | 0.172 |
Manapal/WT (break) | 1.24526 | 0.183 |
Manapal/WT (red) | 0.97872 | 0.863 |
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