Expression of 1-1-3.2.4.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.268080.348
27DAP/17DAP1.02091
39DAP/27DAP1.062930.903
41DAP/39DAP0.986150.941
42DAP/41DAP1.431350.295
43DAP/42DAP0.937540.801
47DAP/43DAP1.342330.216
52DAP/47DAP0.940710.765
57DAP/52DAP0.925140.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.806330.033
17DAP/reference1.037140.606
27DAP/reference1.064270.227
39DAP/reference1.150640.035
41DAP/reference1.081730.451
42DAP/reference1.121610.004
43DAP/reference1.403470.008
47DAP/reference1.605040.001
52DAP/reference1.789230.007
57DAP/reference1.530740.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.659050.036
27DAP/17DAP0.891130.172
39DAP/27DAP1.055820.623
41DAP/39DAP0.94740.849
42DAP/41DAP0.899360.267
43DAP/42DAP1.084310.086
47DAP/43DAP1.032640.892
52DAP/47DAP1.318490.28
57DAP/52DAP1.091610.662
57DAP/7DAP1.560570.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.197040.072
17DAP/reference1.052110.199
27DAP/reference0.913510.088
39DAP/reference1.068410.222
41DAP/reference0.992150.646
42DAP/reference1.052360.534
43DAP/reference1.088260.344
47DAP/reference1.259210.044
52DAP/reference1.148830.062
57DAP/reference1.06260.094

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.076171
17DAP/reference1.076590.508
27DAP/reference1.031230.715
39DAP/reference1.260040.16
41DAP/reference1.125720.199
42DAP/reference1.486560.015
43DAP/reference1.077210.569
47DAP/reference1.480060.008
52DAP/reference0.983330.537
57DAP/reference0.984710.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.487480.025
17DAP/reference1.073190.405
27DAP/reference1.020750.967
39DAP/reference1.072940.157
41DAP/reference1.12230.276
42DAP/reference1.532460.009
43DAP/reference1.404350.022
47DAP/reference1.791570.008
52DAP/reference1.340420.324
57DAP/reference3.212990.007

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.14060.878
26DAP/20DAP1.217980.275
34DAP/26DAP1.081021
51DAP/34DAP1.033960.666
52DAP/51DAP0.876771
53DAP/52DAP1.243110.428
55DAP/53DAP1.042020.994
57DAP/55DAP0.913730.601
62DAP/57DAP0.972480.994
68DAP/62DAP0.968890.787
68DAP/14DAP1.115110.504

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.399370.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.166250.113
Mature Green Tomato/Ripe Tomato0.618050.026
Immature Eggplant/Mature Eggplant0.914770.407
Ripe Pepper/Ripe Tomato0.307570.224
Mature Eggplant/Ripe Tomato0.342340.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.258090.574
1-1-2/M821.077671
12-2/M821.176591
12-4/M821.216881
1-3/M821.31029
2-1-1/M820.899040.92
2-1/M820.641220.322
2-6/M821.028771
3-2/M820.76332
4-1-1/M820.981651
4-1/M821.440710.466
4-3-2/M821.422690.508
4-3/M821.364731
5-3/M820.892210.642
6-2/M820.79371
6-3/M820.974211
7-1/M820.949131
7-2/M820.958250.881
9-3-2/M821.511331

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.317290.277
IL2-6/WTpooled1.146771
IL7-5/WTpooled1.490761
IL7-3/WTpooled1.059271
IL12-4/WTpooled1.336030.624
IL1-4/WTpooled1.060231
WT/WTpooled1.029161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.113941

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.027730.921
DC3000/delta hrp 6h1.008410.95
DC3000/delta hrp 12h1.111051
DC3000/delta hrp 24h0.874670.134

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.790930.124
DC3000 delta B/DC3000 delta AB0.899650.167

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.014611
Exp 36h0.720410.41
Exp 60h0.697960.266

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.084440.98
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.017350.798
transgenic ySAMdc/azygous control (breaker)0.647130.118
transgenic ySAMdc/azygous control (red)0.98561

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.117810.155

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.613840.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.656560.172
Manapal/WT (break)1.245260.183
Manapal/WT (red)0.978720.863