Expression of 1-1-3.2.4.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.022110.964
27DAP/17DAP0.854810.621
39DAP/27DAP0.92150.594
41DAP/39DAP1.041881
42DAP/41DAP0.941851
43DAP/42DAP0.938570.801
47DAP/43DAP0.986470.879
52DAP/47DAP1.044850.964
57DAP/52DAP0.936670.845

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.074420.611
17DAP/reference1.010790.764
27DAP/reference1.029480.771
39DAP/reference1.010390.771
41DAP/reference0.99541
42DAP/reference1.092910.137
43DAP/reference1.038010.617
47DAP/reference1.13760.001
52DAP/reference1.291240.176
57DAP/reference1.025780.478

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.969780.716
27DAP/17DAP1.004371
39DAP/27DAP1.00310.862
41DAP/39DAP0.981390.973
42DAP/41DAP0.959160.708
43DAP/42DAP0.996571
47DAP/43DAP0.921650.28
52DAP/47DAP1.029530.9
57DAP/52DAP0.967670.601
57DAP/7DAP1.016031

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.256790.044
17DAP/reference1.05570.525
27DAP/reference1.049421
39DAP/reference1.142230.133
41DAP/reference1.235170.064
42DAP/reference1.057830.534
43DAP/reference0.982980.527
47DAP/reference1.101540.571
52DAP/reference1.212810.055
57DAP/reference1.176230.117

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.066110.612
17DAP/reference1.163850.151
27DAP/reference1.227390.235
39DAP/reference1.034560.745
41DAP/reference1.148120.587
42DAP/reference1.128460.294
43DAP/reference1.017680.875
47DAP/reference1.059110.527
52DAP/reference1.109670.259
57DAP/reference1.046480.786

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.169390.101
17DAP/reference1.083030.343
27DAP/reference0.879540.078
39DAP/reference0.948610.36
41DAP/reference1.047890.637
42DAP/reference1.182710.408
43DAP/reference1.068370.768
47DAP/reference1.097070.265
52DAP/reference0.972350.69
57DAP/reference1.623890.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.912581
26DAP/20DAP1.045930.905
34DAP/26DAP0.908890.338
51DAP/34DAP1.021950.854
52DAP/51DAP1.037260.588
53DAP/52DAP0.987770.909
55DAP/53DAP0.808620.252
57DAP/55DAP1.074310.997
62DAP/57DAP0.998081
68DAP/62DAP0.920070.81
68DAP/14DAP1.054830.85

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.866430.048

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.094060.287
Mature Green Tomato/Ripe Tomato2.141990.016
Immature Eggplant/Mature Eggplant1.079390.215
Ripe Pepper/Ripe Tomato2.844211
Mature Eggplant/Ripe Tomato6.223730.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.058970.551
1-1-2/M820.96631
12-2/M821.15176
12-4/M821.003821
1-3/M820.994041
2-1-1/M821.128610.689
2-1/M820.68604
2-6/M821.071390.695
3-2/M820.9742
4-1-1/M820.921220.792
4-1/M821.06930.853
4-3-2/M821.234650.508
4-3/M820.967081
5-3/M820.977451
6-2/M82N/AN/A
6-3/M820.92871
7-1/M82N/AN/A
7-2/M820.962321
9-3-2/M821.03761

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.9554
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.277091
IL12-4/WTpooled0.871780.71
IL1-4/WTpooled1.196651
WT/WTpooled0.826881

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.870020.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.004871
DC3000/delta hrp 6h1.066861
DC3000/delta hrp 12h1.255231
DC3000/delta hrp 24h0.890770.438

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.804010.03
DC3000 delta B/DC3000 delta AB0.79260.023

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.96981
Exp 36h0.87030.623
Exp 60h0.90440.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.002811
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.959880.348
transgenic ySAMdc/azygous control (breaker)1.213020.172
transgenic ySAMdc/azygous control (red)1.035590.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.04690.223

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.068931

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.455310.105
Manapal/WT (break)1.219550.381
Manapal/WT (red)3.209580.164