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Expression of 1-1-3.2.4.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.894120.503
27DAP/17DAP1.088530.911
39DAP/27DAP1.515980.429
41DAP/39DAP0.93380.69
42DAP/41DAP1.29020.745
43DAP/42DAP0.901460.827
47DAP/43DAP0.87550.591
52DAP/47DAP1.152790.945
57DAP/52DAP1.361510.907

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.94310.269
17DAP/reference1.00941
27DAP/reference0.924890.176
39DAP/reference1.020240.639
41DAP/reference0.879840.114
42DAP/reference0.931310.035
43DAP/reference1.014390.982
47DAP/reference0.973440.418
52DAP/reference0.919450.244
57DAP/reference1.053020.511

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.25920.089
27DAP/17DAP1.035390.98
39DAP/27DAP0.939440.692
41DAP/39DAP1.08531
42DAP/41DAP1.062450.886
43DAP/42DAP0.82770.105
47DAP/43DAP0.834460.184
52DAP/47DAP1.137820.589
57DAP/52DAP1.099880.513
57DAP/7DAP0.958161

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.157860.15
17DAP/reference1.018721
27DAP/reference1.005541
39DAP/reference1.340580.007
41DAP/reference1.013890.811
42DAP/reference0.994640.675
43DAP/reference1.100290.14
47DAP/reference1.084890.458
52DAP/reference0.90970.213
57DAP/reference0.980870.494

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.122920.597
17DAP/reference0.994680.747
27DAP/reference1.074290.745
39DAP/reference0.947640.322
41DAP/reference0.994710.631
42DAP/reference1.230330.024
43DAP/reference1.419270.081
47DAP/reference1.157220.24
52DAP/reference0.991440.666
57DAP/reference0.877760.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.537740.046
17DAP/reference1.064810.39
27DAP/reference1.008910.883
39DAP/reference1.152820.182
41DAP/reference1.225750.044
42DAP/reference1.649920.029
43DAP/reference1.38230.308
47DAP/reference1.104220.443
52DAP/reference1.198930.146
57DAP/reference0.947410.424

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.01581
26DAP/20DAP1.816260.106
34DAP/26DAP0.81620.488
51DAP/34DAP1.16260.483
52DAP/51DAP0.872351
53DAP/52DAP1.084190.552
55DAP/53DAP0.783710.077
57DAP/55DAP1.167140.947
62DAP/57DAP1.12470.902
68DAP/62DAP1.191220.827
68DAP/14DAP3.618190.063

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.53440.042

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.022081
Mature Green Tomato/Ripe Tomato2.134080.03
Immature Eggplant/Mature Eggplant1.491950.05
Ripe Pepper/Ripe Tomato0.988131
Mature Eggplant/Ripe Tomato1.488530.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.096341
1-1-2/M821.082671
12-2/M821.207331
12-4/M821.148171
1-3/M821.527620.277
2-1-1/M821.039161
2-1/M821.032431
2-6/M820.731060.421
3-2/M821.33225N/A
4-1-1/M820.797231
4-1/M820.70461N/A
4-3-2/M821.130820.246
4-3/M821.297651
5-3/M821.100080.436
6-2/M821.01296N/A
6-3/M821.104111
7-1/M82N/AN/A
7-2/M820.958611
9-3-2/M821.56672N/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.798250.348
IL7-5/WTpooled1.01551N/A
IL7-3/WTpooled0.800830.418
IL12-4/WTpooled0.980310.539
IL1-4/WTpooled1.059171
WT/WTpooled1.019071

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.075551

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.037040.921
DC3000/delta hrp 6h1.044090.95
DC3000/delta hrp 12h1.074841
DC3000/delta hrp 24h1.066930.502

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.022460.556
DC3000 delta B/DC3000 delta AB1.14970.282

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.776861
Exp 36h1.24320.693
Exp 60h1.136980.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.03395N/A
Var 0h0.637140.933
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row11.0838N/A
Var 36h I row2-row11.031960.601
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row11.20710.904
Time course 0hI-0hNI0.826041
Time course 12hI-12hNI0.926570.424
Time course 36hI-36hNI0.825380.132
Time course 60hI-60hNI0.576780.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.010391
transgenic ySAMdc/azygous control (breaker)0.852680.251
transgenic ySAMdc/azygous control (red)1.05830.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.053090.448

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.830310.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.057010.307
Manapal/WT (break)0.952971
Manapal/WT (red)0.799940.274