Expression of 1-1-3.2.4.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89412 | 0.503 |
27DAP/17DAP | 1.08853 | 0.911 |
39DAP/27DAP | 1.51598 | 0.429 |
41DAP/39DAP | 0.9338 | 0.69 |
42DAP/41DAP | 1.2902 | 0.745 |
43DAP/42DAP | 0.90146 | 0.827 |
47DAP/43DAP | 0.8755 | 0.591 |
52DAP/47DAP | 1.15279 | 0.945 |
57DAP/52DAP | 1.36151 | 0.907 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9431 | 0.269 |
17DAP/reference | 1.0094 | 1 |
27DAP/reference | 0.92489 | 0.176 |
39DAP/reference | 1.02024 | 0.639 |
41DAP/reference | 0.87984 | 0.114 |
42DAP/reference | 0.93131 | 0.035 |
43DAP/reference | 1.01439 | 0.982 |
47DAP/reference | 0.97344 | 0.418 |
52DAP/reference | 0.91945 | 0.244 |
57DAP/reference | 1.05302 | 0.511 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.2592 | 0.089 |
27DAP/17DAP | 1.03539 | 0.98 |
39DAP/27DAP | 0.93944 | 0.692 |
41DAP/39DAP | 1.0853 | 1 |
42DAP/41DAP | 1.06245 | 0.886 |
43DAP/42DAP | 0.8277 | 0.105 |
47DAP/43DAP | 0.83446 | 0.184 |
52DAP/47DAP | 1.13782 | 0.589 |
57DAP/52DAP | 1.09988 | 0.513 |
57DAP/7DAP | 0.95816 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15786 | 0.15 |
17DAP/reference | 1.01872 | 1 |
27DAP/reference | 1.00554 | 1 |
39DAP/reference | 1.34058 | 0.007 |
41DAP/reference | 1.01389 | 0.811 |
42DAP/reference | 0.99464 | 0.675 |
43DAP/reference | 1.10029 | 0.14 |
47DAP/reference | 1.08489 | 0.458 |
52DAP/reference | 0.9097 | 0.213 |
57DAP/reference | 0.98087 | 0.494 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12292 | 0.597 |
17DAP/reference | 0.99468 | 0.747 |
27DAP/reference | 1.07429 | 0.745 |
39DAP/reference | 0.94764 | 0.322 |
41DAP/reference | 0.99471 | 0.631 |
42DAP/reference | 1.23033 | 0.024 |
43DAP/reference | 1.41927 | 0.081 |
47DAP/reference | 1.15722 | 0.24 |
52DAP/reference | 0.99144 | 0.666 |
57DAP/reference | 0.87776 | 0.226 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.53774 | 0.046 |
17DAP/reference | 1.06481 | 0.39 |
27DAP/reference | 1.00891 | 0.883 |
39DAP/reference | 1.15282 | 0.182 |
41DAP/reference | 1.22575 | 0.044 |
42DAP/reference | 1.64992 | 0.029 |
43DAP/reference | 1.3823 | 0.308 |
47DAP/reference | 1.10422 | 0.443 |
52DAP/reference | 1.19893 | 0.146 |
57DAP/reference | 0.94741 | 0.424 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0158 | 1 |
26DAP/20DAP | 1.81626 | 0.106 |
34DAP/26DAP | 0.8162 | 0.488 |
51DAP/34DAP | 1.1626 | 0.483 |
52DAP/51DAP | 0.87235 | 1 |
53DAP/52DAP | 1.08419 | 0.552 |
55DAP/53DAP | 0.78371 | 0.077 |
57DAP/55DAP | 1.16714 | 0.947 |
62DAP/57DAP | 1.1247 | 0.902 |
68DAP/62DAP | 1.19122 | 0.827 |
68DAP/14DAP | 3.61819 | 0.063 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.5344 | 0.042 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.02208 | 1 |
Mature Green Tomato/Ripe Tomato | 2.13408 | 0.03 |
Immature Eggplant/Mature Eggplant | 1.49195 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.98813 | 1 |
Mature Eggplant/Ripe Tomato | 1.48853 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.09634 | 1 |
1-1-2/M82 | 1.08267 | 1 |
12-2/M82 | 1.20733 | 1 |
12-4/M82 | 1.14817 | 1 |
1-3/M82 | 1.52762 | 0.277 |
2-1-1/M82 | 1.03916 | 1 |
2-1/M82 | 1.03243 | 1 |
2-6/M82 | 0.73106 | 0.421 |
3-2/M82 | 1.33225 | |
4-1-1/M82 | 0.79723 | 1 |
4-1/M82 | 0.70461 | |
4-3-2/M82 | 1.13082 | 0.246 |
4-3/M82 | 1.29765 | 1 |
5-3/M82 | 1.10008 | 0.436 |
6-2/M82 | 1.01296 | |
6-3/M82 | 1.10411 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.95861 | 1 |
9-3-2/M82 | 1.56672 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.79825 | 0.348 |
IL7-5/WTpooled | 1.01551 | |
IL7-3/WTpooled | 0.80083 | 0.418 |
IL12-4/WTpooled | 0.98031 | 0.539 |
IL1-4/WTpooled | 1.05917 | 1 |
WT/WTpooled | 1.01907 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.07555 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03704 | 0.921 |
DC3000/delta hrp 6h | 1.04409 | 0.95 |
DC3000/delta hrp 12h | 1.07484 | 1 |
DC3000/delta hrp 24h | 1.06693 | 0.502 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.02246 | 0.556 |
DC3000 delta B/DC3000 delta AB | 1.1497 | 0.282 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.77686 | 1 |
Exp 36h | 1.2432 | 0.693 |
Exp 60h | 1.13698 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03395 | |
Var 0h | 0.63714 | 0.933 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | 1.0838 | |
Var 36h I row2-row1 | 1.03196 | 0.601 |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 1.2071 | 0.904 |
Time course 0hI-0hNI | 0.82604 | 1 |
Time course 12hI-12hNI | 0.92657 | 0.424 |
Time course 36hI-36hNI | 0.82538 | 0.132 |
Time course 60hI-60hNI | 0.57678 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01039 | 1 |
transgenic ySAMdc/azygous control (breaker) | 0.85268 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.0583 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05309 | 0.448 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.83031 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.05701 | 0.307 |
Manapal/WT (break) | 0.95297 | 1 |
Manapal/WT (red) | 0.79994 | 0.274 |
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