Expression of 1-1-3.2.4.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.801480.137
27DAP/17DAP0.893530.766
39DAP/27DAP1.182080.685
41DAP/39DAP0.972670.876
42DAP/41DAP0.904921
43DAP/42DAP0.924920.827
47DAP/43DAP0.889650.634
52DAP/47DAP1.13540.828
57DAP/52DAP0.933820.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.120120.101
17DAP/reference0.968610.63
27DAP/reference1.133360.291
39DAP/reference1.027760.747
41DAP/reference0.974150.814
42DAP/reference0.887340.022
43DAP/reference0.757930.287
47DAP/reference0.922930.098
52DAP/reference0.939970.36
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.965830.542
27DAP/17DAP1.098030.554
39DAP/27DAP1.021490.779
41DAP/39DAP1.030010.921
42DAP/41DAP1.005530.926
43DAP/42DAP0.994060.96
47DAP/43DAP1.031110.848
52DAP/47DAP1.021740.915
57DAP/52DAP1.008421
57DAP/7DAP1.124750.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.155190.07
17DAP/reference1.118270.035
27DAP/reference1.038130.371
39DAP/reference1.037650.21
41DAP/reference1.025410.507
42DAP/reference0.987680.612
43DAP/reference1.062290.344
47DAP/reference1.002241
52DAP/reference0.973590.213
57DAP/reference0.938320.086

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.148050.097
17DAP/reference1.067880.756
27DAP/reference1.096470.535
39DAP/reference0.982920.569
41DAP/reference0.873060.076
42DAP/reference0.904430.098
43DAP/reference0.981690.67
47DAP/reference0.881290.017
52DAP/reference0.954270.259
57DAP/reference2.388820.374

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.108360.265
17DAP/reference1.009580.898
27DAP/reference0.975240.442
39DAP/reference0.992220.755
41DAP/reference0.921840.459
42DAP/reference0.917620.361
43DAP/reference0.884320.226
47DAP/reference0.903720.145
52DAP/reference1.004611
57DAP/reference0.754630.042

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.966321
26DAP/20DAP1.120130.567
34DAP/26DAP0.885130.627
51DAP/34DAP1.002870.98
52DAP/51DAP1.040760.616
53DAP/52DAP1.004561
55DAP/53DAP0.897760.293
57DAP/55DAP1.080140.818
62DAP/57DAP1.172790.868
68DAP/62DAP0.996510.914
68DAP/14DAP0.648610.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.384030.033

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.56780.063
Mature Green Tomato/Ripe Tomato1.230830.523
Immature Eggplant/Mature Eggplant1.045940.379
Ripe Pepper/Ripe Tomato0.785680.224
Mature Eggplant/Ripe Tomato1.523110.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.971040.944
1-1-2/M820.957330.958
12-2/M821.050321
12-4/M820.952920.619
1-3/M820.9570.501
2-1-1/M821.233070.764
2-1/M820.776880.322
2-6/M821.038860.695
3-2/M821.161190.717
4-1-1/M821.013161
4-1/M820.99461
4-3-2/M821.103061
4-3/M821.127541
5-3/M821.072771
6-2/M820.86312
6-3/M820.934071
7-1/M82N/AN/A
7-2/M821.126341
9-3-2/M821.055171

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.246961
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.791870.418
IL12-4/WTpooled0.826360.71
IL1-4/WTpooled1.17351
WT/WTpooled1.129691

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.208041

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.033050.921
DC3000/delta hrp 6h0.985910.95
DC3000/delta hrp 12h1.01551
DC3000/delta hrp 24h1.056340.553

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.172990.042
DC3000 delta B/DC3000 delta AB1.134010.318

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.811631
Exp 36h1.320210.693
Exp 60h1.34520.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.7153
Var 0h1.249550.594
Var 12h I row2-row11.113170.176
Var 12h NI row2-row11.17068
Var 36h I row2-row10.978981
Var 36h NI row2-row11.14095
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row10.890371
Time course 0hI-0hNI0.878410.552
Time course 12hI-12hNI0.961410.745
Time course 36hI-36hNI0.938750.46
Time course 60hI-60hNI1.055240.426

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.088640.254
transgenic ySAMdc/azygous control (breaker)1.642490.248
transgenic ySAMdc/azygous control (red)1.36230.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.020080.301

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.700510.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.73761
Manapal/WT (break)0.913641
Manapal/WT (red)1.027911