Expression of 1-1-3.2.4.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80148 | 0.137 |
27DAP/17DAP | 0.89353 | 0.766 |
39DAP/27DAP | 1.18208 | 0.685 |
41DAP/39DAP | 0.97267 | 0.876 |
42DAP/41DAP | 0.90492 | 1 |
43DAP/42DAP | 0.92492 | 0.827 |
47DAP/43DAP | 0.88965 | 0.634 |
52DAP/47DAP | 1.1354 | 0.828 |
57DAP/52DAP | 0.93382 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12012 | 0.101 |
17DAP/reference | 0.96861 | 0.63 |
27DAP/reference | 1.13336 | 0.291 |
39DAP/reference | 1.02776 | 0.747 |
41DAP/reference | 0.97415 | 0.814 |
42DAP/reference | 0.88734 | 0.022 |
43DAP/reference | 0.75793 | 0.287 |
47DAP/reference | 0.92293 | 0.098 |
52DAP/reference | 0.93997 | 0.36 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96583 | 0.542 |
27DAP/17DAP | 1.09803 | 0.554 |
39DAP/27DAP | 1.02149 | 0.779 |
41DAP/39DAP | 1.03001 | 0.921 |
42DAP/41DAP | 1.00553 | 0.926 |
43DAP/42DAP | 0.99406 | 0.96 |
47DAP/43DAP | 1.03111 | 0.848 |
52DAP/47DAP | 1.02174 | 0.915 |
57DAP/52DAP | 1.00842 | 1 |
57DAP/7DAP | 1.12475 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15519 | 0.07 |
17DAP/reference | 1.11827 | 0.035 |
27DAP/reference | 1.03813 | 0.371 |
39DAP/reference | 1.03765 | 0.21 |
41DAP/reference | 1.02541 | 0.507 |
42DAP/reference | 0.98768 | 0.612 |
43DAP/reference | 1.06229 | 0.344 |
47DAP/reference | 1.00224 | 1 |
52DAP/reference | 0.97359 | 0.213 |
57DAP/reference | 0.93832 | 0.086 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14805 | 0.097 |
17DAP/reference | 1.06788 | 0.756 |
27DAP/reference | 1.09647 | 0.535 |
39DAP/reference | 0.98292 | 0.569 |
41DAP/reference | 0.87306 | 0.076 |
42DAP/reference | 0.90443 | 0.098 |
43DAP/reference | 0.98169 | 0.67 |
47DAP/reference | 0.88129 | 0.017 |
52DAP/reference | 0.95427 | 0.259 |
57DAP/reference | 2.38882 | 0.374 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10836 | 0.265 |
17DAP/reference | 1.00958 | 0.898 |
27DAP/reference | 0.97524 | 0.442 |
39DAP/reference | 0.99222 | 0.755 |
41DAP/reference | 0.92184 | 0.459 |
42DAP/reference | 0.91762 | 0.361 |
43DAP/reference | 0.88432 | 0.226 |
47DAP/reference | 0.90372 | 0.145 |
52DAP/reference | 1.00461 | 1 |
57DAP/reference | 0.75463 | 0.042 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.96632 | 1 |
26DAP/20DAP | 1.12013 | 0.567 |
34DAP/26DAP | 0.88513 | 0.627 |
51DAP/34DAP | 1.00287 | 0.98 |
52DAP/51DAP | 1.04076 | 0.616 |
53DAP/52DAP | 1.00456 | 1 |
55DAP/53DAP | 0.89776 | 0.293 |
57DAP/55DAP | 1.08014 | 0.818 |
62DAP/57DAP | 1.17279 | 0.868 |
68DAP/62DAP | 0.99651 | 0.914 |
68DAP/14DAP | 0.64861 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.38403 | 0.033 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.5678 | 0.063 |
Mature Green Tomato/Ripe Tomato | 1.23083 | 0.523 |
Immature Eggplant/Mature Eggplant | 1.04594 | 0.379 |
Ripe Pepper/Ripe Tomato | 0.78568 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.52311 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97104 | 0.944 |
1-1-2/M82 | 0.95733 | 0.958 |
12-2/M82 | 1.05032 | 1 |
12-4/M82 | 0.95292 | 0.619 |
1-3/M82 | 0.957 | 0.501 |
2-1-1/M82 | 1.23307 | 0.764 |
2-1/M82 | 0.77688 | 0.322 |
2-6/M82 | 1.03886 | 0.695 |
3-2/M82 | 1.16119 | 0.717 |
4-1-1/M82 | 1.01316 | 1 |
4-1/M82 | 0.99461 | |
4-3-2/M82 | 1.10306 | 1 |
4-3/M82 | 1.12754 | 1 |
5-3/M82 | 1.07277 | 1 |
6-2/M82 | 0.86312 | |
6-3/M82 | 0.93407 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.12634 | 1 |
9-3-2/M82 | 1.05517 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.24696 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.79187 | 0.418 |
IL12-4/WTpooled | 0.82636 | 0.71 |
IL1-4/WTpooled | 1.1735 | 1 |
WT/WTpooled | 1.12969 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.20804 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03305 | 0.921 |
DC3000/delta hrp 6h | 0.98591 | 0.95 |
DC3000/delta hrp 12h | 1.0155 | 1 |
DC3000/delta hrp 24h | 1.05634 | 0.553 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.17299 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.13401 | 0.318 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.81163 | 1 |
Exp 36h | 1.32021 | 0.693 |
Exp 60h | 1.3452 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.7153 | |
Var 0h | 1.24955 | 0.594 |
Var 12h I row2-row1 | 1.11317 | 0.176 |
Var 12h NI row2-row1 | 1.17068 | |
Var 36h I row2-row1 | 0.97898 | 1 |
Var 36h NI row2-row1 | 1.14095 | |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | 0.89037 | 1 |
Time course 0hI-0hNI | 0.87841 | 0.552 |
Time course 12hI-12hNI | 0.96141 | 0.745 |
Time course 36hI-36hNI | 0.93875 | 0.46 |
Time course 60hI-60hNI | 1.05524 | 0.426 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.08864 | 0.254 |
transgenic ySAMdc/azygous control (breaker) | 1.64249 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.3623 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02008 | 0.301 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.70051 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.7376 | 1 |
Manapal/WT (break) | 0.91364 | 1 |
Manapal/WT (red) | 1.02791 | 1 |
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