Expression of 1-1-3.2.5.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.089710.77
27DAP/17DAP0.937960.922
39DAP/27DAP0.835570.425
41DAP/39DAP1.774070.349
42DAP/41DAP0.92651
43DAP/42DAP1.079431
47DAP/43DAP0.932640.744
52DAP/47DAP1.089810.918
57DAP/52DAP1.19270.892

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.00781
17DAP/reference1.006780.813
27DAP/reference1.023820.58
39DAP/reference1.035060.628
41DAP/reference1.018410.587
42DAP/reference0.9520.078
43DAP/reference0.969250.538
47DAP/reference0.974380.3
52DAP/reference0.966380.427
57DAP/reference0.875620.014

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.89230.185
27DAP/17DAP0.98470.887
39DAP/27DAP1.095390.296
41DAP/39DAP1.004851
42DAP/41DAP0.977590.762
43DAP/42DAP1.064730.25
47DAP/43DAP0.980350.855
52DAP/47DAP0.968790.797
57DAP/52DAP0.974290.68
57DAP/7DAP1.044811

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.056670.664
17DAP/reference1.046960.437
27DAP/reference0.995620.698
39DAP/reference1.036920.436
41DAP/reference0.958170.311
42DAP/reference0.963160.393
43DAP/reference0.938530.202
47DAP/reference0.824460.057
52DAP/reference1.085630.016
57DAP/reference1.037270.746

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.13810.077
17DAP/reference1.067920.113
27DAP/reference1.017850.974
39DAP/reference1.006681
41DAP/reference0.887260.038
42DAP/reference0.942790.089
43DAP/reference1.015060.899
47DAP/reference0.963350.24
52DAP/reference1.072720.034
57DAP/reference1.032240.705

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.072710.303
17DAP/reference1.002260.918
27DAP/reference1.043180.34
39DAP/reference1.017160.578
41DAP/reference0.937820.331
42DAP/reference0.855060.134
43DAP/reference0.950050.416
47DAP/reference0.981510.538
52DAP/reference0.990750.821
57DAP/reference0.637020.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.068820.966
26DAP/20DAP0.98551
34DAP/26DAP1.003881
51DAP/34DAP1.045670.692
52DAP/51DAP0.964141
53DAP/52DAP0.98610.924
55DAP/53DAP1.023910.904
57DAP/55DAP1.065090.935
62DAP/57DAP1.128190.445
68DAP/62DAP1.07520.897
68DAP/14DAP0.835210.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.903440.079

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.627730.072
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.926820.673
1-1-2/M821.09871
12-2/M820.90391
12-4/M821.014921
1-3/M820.78468
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.145010.505
3-2/M820.951241
4-1-1/M82N/AN/A
4-1/M821.118071
4-3-2/M820.819910.698
4-3/M820.8036
5-3/M821.017321
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.02107
7-2/M820.979111
9-3-2/M820.923161

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.969521
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.54892
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled1.09198
IL1-4/WTpooled0.995571
WT/WTpooled1.47469

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.993251

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.970131
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.019381
DC3000/delta hrp 24h1.048790.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.992971
DC3000 delta B/DC3000 delta AB1.02580.593

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.933560.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.008891
Var 0h0.595350.933
Var 12h I row2-row11.057660.443
Var 12h NI row2-row10.909790.494
Var 36h I row2-row10.952551
Var 36h NI row2-row11.013981
Var 60h I row2-row11.310880.562
Var 60h NI row2-row11.088610.904
Time course 0hI-0hNI1.085290.719
Time course 12hI-12hNI1.033830.746
Time course 36hI-36hNI1.015090.799
Time course 60hI-60hNI0.965550.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.89390.172
transgenic ySAMdc/azygous control (red)1.226080.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.976920.362

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.017471

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.94351
Manapal/WT (red)N/AN/A