Expression of 1-1-3.2.5.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08971 | 0.77 |
27DAP/17DAP | 0.93796 | 0.922 |
39DAP/27DAP | 0.83557 | 0.425 |
41DAP/39DAP | 1.77407 | 0.349 |
42DAP/41DAP | 0.9265 | 1 |
43DAP/42DAP | 1.07943 | 1 |
47DAP/43DAP | 0.93264 | 0.744 |
52DAP/47DAP | 1.08981 | 0.918 |
57DAP/52DAP | 1.1927 | 0.892 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0078 | 1 |
17DAP/reference | 1.00678 | 0.813 |
27DAP/reference | 1.02382 | 0.58 |
39DAP/reference | 1.03506 | 0.628 |
41DAP/reference | 1.01841 | 0.587 |
42DAP/reference | 0.952 | 0.078 |
43DAP/reference | 0.96925 | 0.538 |
47DAP/reference | 0.97438 | 0.3 |
52DAP/reference | 0.96638 | 0.427 |
57DAP/reference | 0.87562 | 0.014 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8923 | 0.185 |
27DAP/17DAP | 0.9847 | 0.887 |
39DAP/27DAP | 1.09539 | 0.296 |
41DAP/39DAP | 1.00485 | 1 |
42DAP/41DAP | 0.97759 | 0.762 |
43DAP/42DAP | 1.06473 | 0.25 |
47DAP/43DAP | 0.98035 | 0.855 |
52DAP/47DAP | 0.96879 | 0.797 |
57DAP/52DAP | 0.97429 | 0.68 |
57DAP/7DAP | 1.04481 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05667 | 0.664 |
17DAP/reference | 1.04696 | 0.437 |
27DAP/reference | 0.99562 | 0.698 |
39DAP/reference | 1.03692 | 0.436 |
41DAP/reference | 0.95817 | 0.311 |
42DAP/reference | 0.96316 | 0.393 |
43DAP/reference | 0.93853 | 0.202 |
47DAP/reference | 0.82446 | 0.057 |
52DAP/reference | 1.08563 | 0.016 |
57DAP/reference | 1.03727 | 0.746 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1381 | 0.077 |
17DAP/reference | 1.06792 | 0.113 |
27DAP/reference | 1.01785 | 0.974 |
39DAP/reference | 1.00668 | 1 |
41DAP/reference | 0.88726 | 0.038 |
42DAP/reference | 0.94279 | 0.089 |
43DAP/reference | 1.01506 | 0.899 |
47DAP/reference | 0.96335 | 0.24 |
52DAP/reference | 1.07272 | 0.034 |
57DAP/reference | 1.03224 | 0.705 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07271 | 0.303 |
17DAP/reference | 1.00226 | 0.918 |
27DAP/reference | 1.04318 | 0.34 |
39DAP/reference | 1.01716 | 0.578 |
41DAP/reference | 0.93782 | 0.331 |
42DAP/reference | 0.85506 | 0.134 |
43DAP/reference | 0.95005 | 0.416 |
47DAP/reference | 0.98151 | 0.538 |
52DAP/reference | 0.99075 | 0.821 |
57DAP/reference | 0.63702 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06882 | 0.966 |
26DAP/20DAP | 0.9855 | 1 |
34DAP/26DAP | 1.00388 | 1 |
51DAP/34DAP | 1.04567 | 0.692 |
52DAP/51DAP | 0.96414 | 1 |
53DAP/52DAP | 0.9861 | 0.924 |
55DAP/53DAP | 1.02391 | 0.904 |
57DAP/55DAP | 1.06509 | 0.935 |
62DAP/57DAP | 1.12819 | 0.445 |
68DAP/62DAP | 1.0752 | 0.897 |
68DAP/14DAP | 0.83521 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.90344 | 0.079 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.62773 | 0.072 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92682 | 0.673 |
1-1-2/M82 | 1.0987 | 1 |
12-2/M82 | 0.90391 | |
12-4/M82 | 1.01492 | 1 |
1-3/M82 | 0.78468 | |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.14501 | 0.505 |
3-2/M82 | 0.95124 | 1 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.11807 | 1 |
4-3-2/M82 | 0.81991 | 0.698 |
4-3/M82 | 0.8036 | |
5-3/M82 | 1.01732 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.02107 | |
7-2/M82 | 0.97911 | 1 |
9-3-2/M82 | 0.92316 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.96952 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.54892 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 1.09198 | |
IL1-4/WTpooled | 0.99557 | 1 |
WT/WTpooled | 1.47469 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99325 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.97013 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.01938 | 1 |
DC3000/delta hrp 24h | 1.04879 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.99297 | 1 |
DC3000 delta B/DC3000 delta AB | 1.0258 | 0.593 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 0.93356 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00889 | 1 |
Var 0h | 0.59535 | 0.933 |
Var 12h I row2-row1 | 1.05766 | 0.443 |
Var 12h NI row2-row1 | 0.90979 | 0.494 |
Var 36h I row2-row1 | 0.95255 | 1 |
Var 36h NI row2-row1 | 1.01398 | 1 |
Var 60h I row2-row1 | 1.31088 | 0.562 |
Var 60h NI row2-row1 | 1.08861 | 0.904 |
Time course 0hI-0hNI | 1.08529 | 0.719 |
Time course 12hI-12hNI | 1.03383 | 0.746 |
Time course 36hI-36hNI | 1.01509 | 0.799 |
Time course 60hI-60hNI | 0.96555 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 1.8939 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.22608 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97692 | 0.362 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01747 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.9435 | 1 |
Manapal/WT (red) | N/A | N/A |
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